Hi Doug, That works! Thanks! I don't know why it didn't the first time (I can't find the old command line). But this command line works (in case anybody else wants to do the same thing):
[LMR in ~ ] mri_cor2label --i /home/lmr/ANALYSIS/binary_pmaps/lh_binarymap_area_covar8.mgh --id 1 --l /home/lmr/ANALYSIS/binary_pmaps/lh_binarymap_area_covar8 --surf fsaverage lh LMR Douglas N Greve <http://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=from:%22Douglas+N+Greve%22> Fri, 11 Jul 2014 11:02:38 -0700 <http://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=date:20140711> use mri_cor2label with the --surf option On 07/11/2014 01:36 PM, Bruce Fischl wrote: > Hi Lars > > this would be pretty simple to do in matlab, but I'm not sure if we > have anything do to it otherwise (Doug might) > > cheers > Bruce > On Fri, 11 Jul 2014, Lars M. Rimol wrote: > >> Hi, >> >> Is there a way to take a binary .mgh file (surface file with 163842 >> vertices containing 1 or >> 0) and create a label such that the ones in the input file == the >> label? For instance, to >> create a label from a p-map. >> >> I tried using mri_cor2label based on previous responses on the >> mailing list, but that seems >> to produce volumes and I'm not really sure what it does anyway... >> >> >> Thank you! >> >> >> >> -- >> yours, >> Lars M. Rimol, PhD >> St. Olavs Hospital >> Trondheim, >> Norway >> >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR centergr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine athttp://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. - Previous message <http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg36914.html> - View by thread <http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/index.html#36917> - View by date <http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/maillist.html#36917> - Next message <http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg36915.html> - [Freesurfer] create label from binary .mgh file <http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg36913.html> Lars M. Rimol - - Re: [Freesurfer] create label from binary .mgh file <http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg36914.html> Bruce Fischl - - Re: [Freesurfer] create label from binary .mgh fi... Douglas N Greve Reply via email to [image: The Mail Archive] <http://www.mail-archive.com/> - The Mail Archive home <http://www.mail-archive.com/> - freesurfer - all messages <http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/> - freesurfer - about the list <http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/info.html> - Previous message <http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg36914.html> - Next message <http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg36915.html> -- yours, Lars M. Rimol, PhD St. Olavs Hospital Trondheim, Norway
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