Hi Angela, Have you tried that: http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg30506.html ?
You can look also in the release notes (http://freesurfer.net/fswiki/ReleaseNotes), under LGI issue when using Matlab 2013. The issue will be corrected in the next FreeSurfer release. Let mw know if it doesn't work, Marie On Jul 19, 2014, at 1:56 AM, angela.fav...@unipd.it wrote: > Dear FS experts, > I had no answer to my question below (log was attached in my previous mail) > The error repeated in different subjects and I do not know how to > overcome. Can anyone give me some help? > > Angela > > > > Hi all, > I had an error message while running LGI recon > I am using Freesurfer 5.3 with a MacOS lion 10.7.5 and Matlab 2013b with > the Image processing toolbox > > Any help is welcome. Thank you! > Angela > > > the error is: > > mesh_outer = > > vertices: [61278x3 double] > faces: [122552x3 double] > facesOfVertex: [61278x1 struct] > > preparing pial mesh structure ... > ...searching for mesh edges...done (315.30 sec). > ... creating path file for vertex 1 / 61278 > area file for outer ROIs saved at 1 > {Improper assignment with rectangular empty matrix. > > Error in dsearchn (line 79) > [d(i),t(i)] = min(sum((x-yi).^2,2)); > > Error in mesh_vertex_nearest (line 29) > nearestIndex = dsearchn(vertices,points); > > Error in reorganize_verticeslist (line 28) > > [nextindex,nextvalue]=mesh_vertex_nearest(mesh_total.vertices(remaininglist,:),mesh_total.vertices(verticeslist(start_vertex),:)); > > Error in make_roi_paths (line 93) > reorglist = reorganize_verticeslist (mesh_total, A, mesh_outer, perim, > verticeslist, step); > } >>> > ERROR: make_roi_paths did not complete successfully! > Darwin iMac-di-Angela.local 11.4.2 Darwin Kernel Version 11.4.2: Thu Aug > 23 16:25:48 PDT 2012; root:xnu-1699.32.7~1/RELEASE_X86_64 x86_64 > > recon-all -s subj001 exited with ERRORS at Tue Jul 15 10:23:17 CEST 2014 > > To report a problem, see > http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
