set: Variable name must begin with a letter.
gunzip: Command not found.
ans =
1
On 30 Jul 2014, at 16:27, Douglas N Greve wrote:
>
> And in matlab, what do you get if you type
>
> unix('which gunzip')
>
>
>
>
> On 07/30/2014 11:08 AM, Sarina Iwabuchi wrote:
>> I get:
>>
>> /usr/bin/gunzip
>>
>> On 30 Jul 2014, at 15:58, Douglas N Greve wrote:
>>
>>>
>>> Is gunzip in your path? When you open a shell and type
>>> which gunzip
>>>
>>> what is printed out?
>>>
>>>
>>> On 07/30/2014 10:45 AM, Sarina Iwabuchi wrote:
>>>> Hi Bruce,
>>>>
>>>> It still shows the same error:
>>>>
>>>> set: Variable name must begin with a letter.
>>>> gunzip: Command not found.
>>>> ERROR: problem reading fname
>>>> set: Variable name must begin with a letter.
>>>> rm: Command not found.
>>>> SWITCH expression must be a scalar or string constant.
>>>>
>>>> Error in load_mgh (line 158)
>>>> switch type
>>>>
>>>> Error in MRIread (line 87)
>>>> [mri.vol, M, mr_parms, volsz] = load_mgh(fspec,[],[],headeronly);
>>>>
>>>> Sarina
>>>>
>>>> On 30 Jul 2014, at 14:23, Bruce Fischl wrote:
>>>>
>>>>> Hi Sarina,
>>>>>
>>>>> you need to have $FREESURFER_HOME/matlab in your matlab path. Try:
>>>>>
>>>>> addpath(sprintf('%s/matlab', getenv('FREESURFER_HOME')))
>>>>>
>>>>> cheers
>>>>> Bruce
>>>>>
>>>>> On Wed,
>>>>> 30 Jul 2014, Sarina Iwabuchi wrote:
>>>>>
>>>>>> Hi Doug,
>>>>>> I get the following error:
>>>>>>
>>>>>> Undefined function 'MRIread' for input arguments of type 'char'.
>>>>>>
>>>>>> Sarina
>>>>>>
>>>>>> On 29 Jul 2014, at 18:34, Douglas N Greve wrote:
>>>>>>
>>>>>> a =
>>>>>> MRIread('/Volumes/HD-PNTU3/MISSEDDATA/extn003/surf/tmp-mris_compute_lgi-lh.
>>>>>> pial/lh.pial.filled.mgz');
>>>>>>
>>>>>>
>>>>>> Sarina IwabuchiDivision of Psychiatry and Applied Psychology
>>>>>> Room B07 Institute of Mental Health
>>>>>> Triumph Road
>>>>>> University of Nottingham
>>>>>> Nottingham NG7 2TU
>>>>>>
>>>>>>
>>>>>> This message and any attachment are intended solely for the
>>>>>> addressee and
>>>>>> may contain confidential information. If you have received this
>>>>>> message in
>>>>>> error, please send it back to me, and immediately delete it.
>>>>>> Please do not
>>>>>> use, copy or disclose the information contained in this message or
>>>>>> in any
>>>>>> attachment. Any views or opinions expressed by the author of this
>>>>>> email do
>>>>>> not necessarily reflect the views of the University of Nottingham.
>>>>>>
>>>>>> This message has been checked for viruses but the contents of an
>>>>>> attachment
>>>>>> may still contain software viruses which could damage your
>>>>>> computer system,
>>>>>> you are advised to perform your own checks. Email communications
>>>>>> with the
>>>>>> University of Nottingham may be monitored as permitted by UK
>>>>>> legislation.
>>>>>>
>>>>>>
>>>>>>
>>>>> _______________________________________________
>>>>> Freesurfer mailing list
>>>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>
>>>>>
>>>>> The information in this e-mail is intended only for the person to
>>>>> whom it is
>>>>> addressed. If you believe this e-mail was sent to you in error and
>>>>> the e-mail
>>>>> contains patient information, please contact the Partners
>>>>> Compliance HelpLine at
>>>>> http://www.partners.org/complianceline . If the e-mail was sent to
>>>>> you in error
>>>>> but does not contain patient information, please contact the sender
>>>>> and properly
>>>>> dispose of the e-mail.
>>>> Sarina Iwabuchi
>>>> Division of Psychiatry and Applied Psychology
>>>> Room B07 Institute of Mental Health
>>>> Triumph Road
>>>> University of Nottingham
>>>> Nottingham NG7 2TU
>>>>
>>>> This message and any attachment are intended solely for the
>>>> addressee and may contain confidential information. If you have
>>>> received this message in error, please send it back to me, and
>>>> immediately delete it. Please do not use, copy or disclose the
>>>> information contained in this message or in any attachment. Any
>>>> views or opinions expressed by the author of this email do not
>>>> necessarily reflect the views of the University of Nottingham.
>>>>
>>>> This message has been checked for viruses but the contents of an
>>>> attachment
>>>> may still contain software viruses which could damage your computer
>>>> system, you are advised to perform your own checks. Email
>>>> communications with the University of Nottingham may be monitored as
>>>> permitted by UK legislation.
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> _______________________________________________
>>>> Freesurfer mailing list
>>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>
>>>>
>>>
>>> --
>>> Douglas N. Greve, Ph.D.
>>> MGH-NMR Center
>>> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>
>>> Phone Number: 617-724-2358
>>> Fax: 617-726-7422
>>>
>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>>>
>>> _______________________________________________
>>> Freesurfer mailing list
>>> Freesurfer@nmr.mgh.harvard.edu
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>> Sarina Iwabuchi
>> Division of Psychiatry and Applied Psychology
>> Room B07 Institute of Mental Health
>> Triumph Road
>> University of Nottingham
>> Nottingham NG7 2TU
>>
>>
>> This message and any attachment are intended solely for the addressee
>> and may contain confidential information. If you have received this
>> message in error, please send it back to me, and immediately delete
>> it. Please do not use, copy or disclose the information contained in
>> this message or in any attachment. Any views or opinions expressed by
>> the author of this email do not necessarily reflect the views of the
>> University of Nottingham.
>>
>> This message has been checked for viruses but the contents of an
>> attachment may still contain software viruses which could damage your
>> computer system, you are advised to perform your own checks. Email
>> communications with the University of Nottingham may be monitored as
>> permitted by UK legislation.
>>
>>
>>
>>
>> _______________________________________________
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> gr...@nmr.mgh.harvard.edu
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Sarina Iwabuchi
Division of Psychiatry and Applied Psychology
Room B07 Institute of Mental Health
Triumph Road
University of Nottingham
Nottingham NG7 2TU
This message and any attachment are intended solely for the addressee and may
contain confidential information. If you have received this message in error,
please send it back to me, and immediately delete it. Please do not use, copy
or disclose the information contained in this message or in any attachment.
Any views or opinions expressed by the author of this email do not necessarily
reflect the views of the University of Nottingham.
This message has been checked for viruses but the contents of an attachment
may still contain software viruses which could damage your computer system, you
are advised to perform your own checks. Email communications with the
University of Nottingham may be monitored as permitted by UK legislation.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
