Hi Arsula
are you running this through recon-all or outside of it? The skull
stripping works better after the intensity normalization that is part of
recon-all
cheers
Bruce
On Fri, 29 Aug 2014, Úrsula Pérez Ramírez wrote:
Hello,
I’m new with FreeSurfer and I’m getting a really bad skull stripping (almost
nothing) with mri_watershed –atlas in images converted from DICOM to .mgz
with mri_convert. I lowered the threshold but did not improved considerably.
I have tried with a subject from the tutorial dataset and it’s OK. What can
be the problem?
Thank you very much!
Úrsula
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