the commands I gave you will do this On 09/06/2014 07:47 AM, Reza Rajimehr wrote: > I forgot to mention that I want to use undistorted EPI volumes for the > functional-anatomical registration. > > >> Hi, >> >> I have a basic question, but the answer can be useful for others as well. >> >> I am doing a customized preprocessing of monkey functional data in FS-FAST >> v5.3. After motion correction and before functional-anatomical >> registration, I want to use fieldmap data to correct spatial distortions >> of EPI data. So: >> >> My fieldmap data: dicom files from a fieldmap scan (there are actually two >> series of dicom files for that scan) >> >> My EPI data: fmc.nii.gz files in run folders >> >> Now I have three questions: >> >> 1) How can I unpack the fieldmap data? An example command ... >> >> 2) How can I use FS-FAST's epidewarp.fsl command for my dataset? Again an >> example command would be very useful. >> >> 3) How will the undistorted volumes be used later on in the FS-FAST >> analysis stream? >> >> Your help would be very much appreciated. >> >> Thanks, >> Reza > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >
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