Dear Doug, Thank you for your email.
On Wed, Sep 24, 2014 at 8:57 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > > >> 2) While most of the CBF to T1 registrations using the transformation for >> the PD to the T1 image worked reasonably, there are a few where the >> registration is a little off (almost exclusively requiring some translation >> in the SI direction) - what is the best way to correct the registration and >> generate a better fitting transformation matrix? (either manually or using >> some other tool) >> > What did you use to do the registration? bbregister: bbregister --s $2_FS --mov $2_ASL_PD.nii.gz --reg $2_Reg.dat --t1 --init-fsl > >> 3) Do I not need to use seg-erode to minimize partial voluming? >> > You may, but then you may lose an entire ROI, esp in cortex. I'll have > some PVC software for the next release. Thanks! Will take out erode step with the ASL data. Best wishes, Sal
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
