They are different analyses. If you want to use the stats file, then you'll need to edit the parcellation/annotation to remove the offending areas. I think you can do this in FreeView, but someone else will have to guide you because I've never done it.
doug On 10/14/2014 11:57 AM, Adam, Ruth wrote: > Hi, > > Would that make a difference? > I would like to use the stats file, unless you recommend otherwise. > Thanks! > > Best, > ruthi > > > On 14 Oct 2014, at 17:43, Douglas N Greve <gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > >> >> Which cortical thickness measure? The value in the stats file or the >> values in the map prior to voxel-wise analysis? >> >> >> On 10/10/2014 03:57 AM, Adam, Ruth wrote: >>> Hi, >>> >>> I would like to exclude areas which were incorrectly segmented and >>> could not be corrected after editing and re-running recon-all from the >>> cortical thickness measure. >>> Thank you again. >>> >>> Best, >>> ruthi >>> >>> >>> On 09 Oct 2014, at 19:57, Douglas Greve <gr...@nmr.mgh.harvard.edu >>> <mailto:gr...@nmr.mgh.harvard.edu> >>> <mailto:gr...@nmr.mgh.harvard.edu>> wrote: >>> >>>> What analysis? >>>> >>>> On 10/9/14 11:35 AM, Adam, Ruth wrote: >>>>> Hi all, >>>>> >>>>> Would be great is someone can tell me how to exclude >>>>> user-defined labels from the analysis. >>>>> >>>>> As far as I understand after creating all labels, mris_label2annot >>>>> with a custom colortable should be used. >>>>> -Is this correct or is there a more efficient way to exclude labels >>>>> form analysis? >>>>> -How can the new annotation file be incorporated with old annotation >>>>> files to mark what should be excluded/included in the analysis? >>>>> -Can a similar operation be done directly for labels created in >>>>> Tkmedit and volumes? >>>>> >>>>> Thank you very much in advance! >>>>> >>>>> Best, >>>>> ruthi >>>>> >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> <mailto:Freesurfer@nmr.mgh.harvard.edu><mailto:Freesurfer@nmr.mgh.harvard.edu> >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> The information in this e-mail is intended only for the person to >>>> whom it is >>>> addressed. If you believe this e-mail was sent to you in error and >>>> the e-mail >>>> contains patient information, please contact the Partners Compliance >>>> HelpLine at >>>> http://www.partners.org/complianceline. If the e-mail was sent to >>>> you in error >>>> but does not contain patient information, please contact the sender >>>> and properly >>>> dispose of the e-mail. >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop:https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >> Outgoing:ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
