Can you run it with --debug as the first argument and send the terminal output? doug
On 11/05/2014 04:21 PM, Cooke, Gillian wrote: > > Hi All, > > > I am getting a consistent error when I try to run mris_preproc - I'm > baffled as I've used all of my scripts and fsgd files before. > > There are 2 groups with 3 covariates but I keep getting this error: > > > mris_preproc --fsgd fsgd/HRR60.fsgd --cache-in > thickness.fwhm10.fsaverage --target fsaverage --hemi lh --out > mris_preproc/lh.HRR60.thickness.10.mgh > > ERROR: no subjects specified > > > But my fsgd file lists all subject numbers: > > > GroupDescriptorFile 1 > > Title ACCE HRR60 > > Class Control > > Class Cancer > > VariablesAge_demeanedEd_demeanedHRR60 > > Input505_1Cancer-5.631.543 > > Input506_1Cancer7.373.553 > > Input509_1Cancer4.37-0.544 > > Input517_1Cancer-20.63-1.538 > > Input518_1Cancer-4.63-2.535 > > Input520_1Cancer0.371.537 > > Input521_1Control3.371.549 > > Input524_1Cancer3.37-0.532 > > Input525_1Control-12.63-2.551 > > #Input528_1Cancer10.373.5 > > Input529_1Control-28.634.532 > > Input530_1Cancer1.371.524 > > Input531_1Cancer6.377.555 > > Input532_1Cancer-1.631.514 > > Input533_1Cancer-10.633.536 > > Input534_1Control-3.631.525 > > Input536_1Control-11.63047 > > Input547_1Control10.371.525 > > Input548_1Control-18.63-0.546 > > Input549_1Cancer-21.63-0.538 > > Input554_1Control-21.63-0.538 > > Input558_1Cancer9.37-1.524 > > Input563_1Control0.370.530 > > Input564_1Control7.371.514 > > > > Any help is greatly appreciated! > > Gill > > > _____________________ > > Gillian Cooke, Ph.D. > > Postdoctoral Research Associate > > Lifelong Brain & Cognition Lab > > Decision Neuroscience Lab > > Beckman Institute > > University of Illinois, Urbana > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
