SE8RECON.tar.gz <https://docs.google.com/file/d/0B1_Gk_rrHt9jSVJfVV83WEd3NzA/edit?usp=drive_web> SE19RECON.tar.gz <https://docs.google.com/file/d/0B1_Gk_rrHt9jU0V6NW5mRTRtNms/edit?usp=drive_web> SE20RECON.tar.gz <https://docs.google.com/file/d/0B1_Gk_rrHt9jZEREaks2bTc2OE0/edit?usp=drive_web> Hi Bruce,
They are all T1-w contrast but acquired with different pulse sequences and resolution. SE8: sagital T1 Flair, at resolution 1x.9375x.9375 SE19: Axial FSPGR 3D, at resolution: .4688x.4688x.4 SE20: Axial FSPGR Bravo, at resolution: .4688x.4688x.4 The data after run *-Recon-all *are in the attach file 2014-12-14 22:28 GMT+07:00 Bruce Fischl <fis...@nmr.mgh.harvard.edu>: > > Hi Trinh > > what was the difference between the acquisitions? There is no way for us > to determine the underlying cause from just the inflated/aparc views. If > you send us the MRI data and/or the 3 subject dirs we can take a look. > > cheers > Bruce > > > > On Sun, 14 Dec 2014, Thục Trinh wrote: > > Hello Freesurfer Experts, >> Here is my procedure that I have a small problem on: >> >> I took MRI structure images on one subject, but used different Contrast. I >> ran Recon-all command on those images to finalize the best quality between >> them. >> >> After running tksurfer command to see the results of cortical >> segmentation, one image of SE8 (subject's identified name), has >> been completely segmented and almost perfectly smooth; however, at the >> same >> time, the others of the same subject seem the border lines to be messed >> up. >> May you please explain to me specifically about that and furthermore to >> show >> me how to correct it. >> >> The images are attached to this email. >> Hope to hear your positive feedback asap. >> >> Thank you and Have a nice day. >> Trinh Tran. >> [cleardot.gif] >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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