Hi Celine hard to tell from the slices. Are there voxels labeled ventricle there? If so, you need to correct the aseg. If not, it's probably a topological defect that is fixed incorrectly. If you upload the subject we'll take a look Bruce On Fri, 16 Jan 2015, Celine Louapre wrote:
> Sorry forgot the attachement :-) > >> Hi Freesurfer team >> We have been struggling with editing recon for one patient, see the 2 >> slices attached. The problem is that the surface don't go all the way up >> to the bottom of the sulci. I had this some times before but usually >> managed to fix it with editing the wm and the aseg, but this time I >> couldn't have it work correctly. Would you have a clue to help me on that? >> I can put the data in some folders if you want to take a look at the >> entire volumes. >> Thanks for your help >> Celine >> >> -- >> Celine Louapre, MD-PhD >> Research Fellow at Massachusetts General Hospital >> Department of Radiology, MGH >> >> Building 149, Room 2301 >> 13th Street >> Charlestown, MA 02129 >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
