Hi Bruce, Thanks for the reply. I am not sure if I am fundamentally wrong at some places. I am new to freesurfer, previously I processed some .nii files with recon-all command which created surfaces like lh.pial/rh.pial etc. After that I did cortical percellation. But the data that I am using now are IBSR (http://www.nitrc.org/projects/ibsr) manually labeled volume data (contains img/hdr/mat file). But I want to get labeled surface like lh.pial/rh.pial from this labeled volume data. I was looking into mri_vol2surf command, but it needs a parameter --srcreg which I am not sure about. How can I get this registration file? Do I need to create this using freesurfer?
I highly appreciate your time and suggestion. Thanks On Tue, Feb 10, 2015 at 9:54 PM, Douglas Greve <gr...@nmr.mgh.harvard.edu> wrote: > > If the labels are a segmentation volume, then you'll need to run > mri_vol2surf with --interp nearest. > doug > > > > On 2/10/15 6:39 PM, Bruce Fischl wrote: > > Hi Razib > > yes, I think mri_label2label will do this if you have reconstructed the > surfaces. > > cheers > Bruce > On Tue, 10 Feb 2015, Muhammad Razib wrote: > > Hi, > I am wondering is there a way in freesurfer to map manually labeled IBSR > MRI > .img/.hdr volume files to freesurfer surface file (e.g. lh.pial/rh.pial > etc.) keeping the original labels? > > Thanks, > > Razib > > > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Muhammad Razib PhD Student in Computer Science Florida International University Miami, FL, USA
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