This is hard coded unfortunately. I've bumped it up to 20k in the most 
recent version. I've put a linux version here

ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_glmfit



On 03/16/2015 06:38 AM, Avram Holmes wrote:
> FreeSurfer List,
>
> I am attempting to run an analyses on 2051 participants. However, when 
> I reach the mri_glmfit stage I receive the following error.
>
> ERROR: gdfReadV1: the number of inputs in FSGD file exceeds the 
> maximum allowed 2000
>
> Is there a work around for this?
>
> Thank you in advance for any help you can offer,
> Avram
>
> Avram Holmes PhD
> Assistant Professor
> Department of Psychology, Yale University
> Email: avram.hol...@yale.edu <mailto:avram.hol...@yale.edu>
> Office: 203-436-9240
> Web: holmeslab.commons.yale.edu <http://holmeslab.commons.yale.edu>
>
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

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