Hi Kody you can use bbregister to register the T2 to the surfaces (and hence the T1) after you have run recon-all.
cheers Bruce On Thu, 21 May 2015, zal...@u.washington.edu wrote: > > > Hello again Freesurfer team, > > Is it possible to perform a motion correction with only a T1 and a T2 scan, > as my lab only has one available T1 scan per participant. > Since the intensities of T1 and T2 are opposite of one another I've had no > luck so far, but perhaps your team knows of a work-around. > > Best, > Kody J. Zalewski > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
