Hi list, I'm configuring mkanalysis-sess to configure an analysis for FC data by FS-FAST. I do not understand how I can perform mni305 volume-based analysis. How can I configure an analysis for mni305? Specifically, which is the paradigm file in -taskreg? How is the command for group level preprocessing using seg305? I have performed these step: 1. Analyze anatomicals in FreeSurfer (recon-all) 2. Create subjectname file. 3. Preprocessing preproc-sess -s Sess01 -fwhm 5 -surface fsaverage lhrh -mni305 -fsd rest -per-run 4. Parameters configuration to creates a text file describing the FC seed for an individual. fcseed-config -segid 10 -fcname L_Thalamus.dat -fsd rest -mean -cfg mean.L_Thalamus.config fcseed-config -segid 49 -fcname R_Thalamus.dat -fsd rest -mean -cfg mean.R_Thalamus.config
5. fcseed-sess -s Sessid -cfg mean.R_Thalamus.configfcseed-sess -s Sessid -cfg mean.L_Thalamus.config 6. Create nuisance variables: fcseed-config -wm -fcname wm.dat -fsd rest -pca -cfg wm.config fcseed-sess -s sessionid -cfg wm.config fcseed-config -vcsf -fcname vcsf.dat -fsd rest -pca -cfg vcsf.config fcseed-sess -s sessionid -cfg vcsf.config 7. selxavg3-sess -s Sessid -a fc.lthalseed.surf.lhselxavg3-sess -s Sessid -a fc.rthalseed.surf.lh ThanksStefano
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