Hi Zeke, I would like to try that version on comet to see if I get a significant speed-up. Can you provide an address and pathname from which I can use wget to grab it? I'll report back with results compared with the standard release. Thanks,
Don Don Krieger, Ph.D. Department of Neurological Surgery University of Pittsburgh ________________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Z K [zkauf...@nmr.mgh.harvard.edu] Sent: Friday, May 22, 2015 12:06 PM To: Freesurfer support list Subject: Re: [Freesurfer] freesurfer-Linux-centos7_x86_64-dev-20150521 on ubuntu 14.04 crash with Illegal instruction (core dumped) That particular developmental build is compiled with optimization flags for machines containing Intels new Haswell processor and wont run on platforms without it. Although that build is available via our dev download page, it remains an unsupported build that exists primarily for internal experimental purposes only. -Zeke On 05/22/2015 11:49 AM, Knut J Bjuland wrote: > Hi > > I have tired the freesurfer-Linux-centos7_x86_64-dev-20150521. When I > start mri_convert on ubuntu 14.04.4 I get this results. > > knutjb@dmed4960:/usr/local/freesurfer60$ export FREESURFER_HOME= > /usr/local/freesurfer60 > knutjb@dmed4960:/usr/local/freesurfer60$ source > /usr/local/freesurfer60/SetUpFreeSurfer.sh > -------- freesurfer-Linux-centos7_x86_64-dev-20150521 -------- > Setting up environment for FreeSurfer/FS-FAST (and FSL) > FREESURFER_HOME /usr/local/freesurfer60 > FSFAST_HOME /usr/local/freesurfer/fsfast > FSF_OUTPUT_FORMAT nii.gz > SUBJECTS_DIR /home/knutjb/subjects > MNI_DIR /usr/local/freesurfer/mni > FSL_DIR /usr/share/fsl/5.0 > knutjb@dmed4960:/usr/local/freesurfer60$ mri_con > mri_concat mri_concatenate_lta mri_convert_crash > mri_concatenate_gcam mri_convert mri_convert_mdh > knutjb@dmed4960:/usr/local/freesurfer60$ mri_convert --help > Illegal instruction (core dumped) > knutjb@dmed4960:/usr/local/freesurfer60$ mri_convert -h > Illegal instruction (core dumped) > knutjb@dmed4960:/usr/local/freesurfer60$ > > and in GDB > Starting program: /usr/local/freesurfer60/bin/mri_convert > [Thread debugging using libthread_db enabled] > Using host libthread_db library "/lib/x86_64-linux-gnu/libthread_db.so.1". > > Program received signal SIGILL, Illegal instruction. > 0x00000000006be48f in make_cmd_version_string (argc=argc@entry=1, > argv=argv@entry=0x7fffffffdd98, > id_string=id_string@entry=0xc6de08 "$Id: mri_convert.c,v 1.221 > 2015/04/16 18:56:00 greve Exp $", > version_string=version_string@entry=0xc6cd66 "$Name: $", > return_string=return_string@entry=0x7fffffffb0e0 "(\rW\366\377\177") > at version.c:215 > 215 version.c: No such file or directory. > > Knut Jørgen Bjuland > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
