no ./rh.unknown.label was created. Yawu On Mon, May 25, 2015 at 7:22 PM, Douglas Greve <gr...@nmr.mgh.harvard.edu> wrote:
> Is there a file called ./rh.unknown.label ? > > > > On 5/25/15 5:37 AM, Liu Y wrote: > > Dear Freesurfers, > I tried to generate annotations by using the command mris_label2annot --s > K_TS66 --h rh --ctab aparc.annot.ctab --a Liu --nhits nhits.mgh. But Could > not succeed. Any helps would be appreciated. > > ------- freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 -------- > Setting up environment for FreeSurfer/FS-FAST (and FSL) > FREESURFER_HOME /home/Liu/freesurfer > FSFAST_HOME /home/Liu/freesurfer/fsfast > FSF_OUTPUT_FORMAT nii.gz > SUBJECTS_DIR /home/Liu/freesurfer/subjects > MNI_DIR /home/Liu/freesurfer/mni > FSL_DIR /usr/local/fsl > > under folder /home/Liu/freesurfer/subjects/K_TS66/label, I run > mris_label2annot --s K_TS66 --h rh --ctab aparc.annot.ctab --a Liu --nhits > nhits.mgh. > > output: > Reading ctab aparc.annot.ctab > Number of ctab entries 36 > INFO: no labels specified, generating from ctab > 0 ./rh.unknown.label > 1 ./rh.bankssts.label > 2 ./rh.caudalanteriorcingulate.label > 3 ./rh.caudalmiddlefrontal.label > 4 ./rh.corpuscallosum.label > 5 ./rh.cuneus.label > 6 ./rh.entorhinal.label > 7 ./rh.fusiform.label > 8 ./rh.inferiorparietal.label > 9 ./rh.inferiortemporal.label > 10 ./rh.isthmuscingulate.label > 11 ./rh.lateraloccipital.label > 12 ./rh.lateralorbitofrontal.label > 13 ./rh.lingual.label > 14 ./rh.medialorbitofrontal.label > 15 ./rh.middletemporal.label > 16 ./rh.parahippocampal.label > 17 ./rh.paracentral.label > 18 ./rh.parsopercularis.label > 19 ./rh.parsorbitalis.label > 20 ./rh.parstriangularis.label > 21 ./rh.pericalcarine.label > 22 ./rh.postcentral.label > 23 ./rh.posteriorcingulate.label > 24 ./rh.precentral.label > 25 ./rh.precuneus.label > 26 ./rh.rostralanteriorcingulate.label > 27 ./rh.rostralmiddlefrontal.label > 28 ./rh.superiorfrontal.label > 29 ./rh.superiorparietal.label > 30 ./rh.superiortemporal.label > 31 ./rh.supramarginal.label > 32 ./rh.frontalpole.label > 33 ./rh.temporalpole.label > 34 ./rh.transversetemporal.label > 35 ./rh.insula.label > > $Id: mris_label2annot.c,v 1.17 2011/03/02 00:04:32 nicks Exp $ > cwd /home/Liu/freesurfer/subjects/K_TS66/label > cmdline mris_label2annot --s K_TS66 --h rh --ctab aparc.annot.ctab --a Liu > --nhits nhits.mgh > sysname Linux > hostname D4201Z > machine x86_64 > user Liu > > subject K_TS66 > hemi rh > SUBJECTS_DIR /home/Liu/freesurfer/subjects > ColorTable aparc.annot.ctab > AnnotName Liu > NHitsFile nhits.mgh > nlables 36 > LabelThresh 0 0.000000 > Loading /home/Liu/freesurfer/subjects/K_TS66/surf/rh.orig > No such file or directory > mris_label2annot: could not open label file ./rh.unknown.label > No such file or directory > ERROR: reading ./rh.unknown.label > > There is indeed a rh.orig file under > /home/Liu/freesurfer/subjects/K_TS66/surf/ > > Thanks, > Yawu > > > > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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