Thanks for pinpointing the problem, Elijah. We are working on a solution.
Cheers,
/Eugenio
Juan Eugenio Iglesias
Postdoctoral researcher BCBL
www.jeiglesias.com
www.bcbl.eu
Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer
----- Original Message -----
From: "Elijah Mak" <fk...@medschl.cam.ac.uk>
To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu>
Sent: Wednesday, May 27, 2015 7:31:17 PM
Subject: [Freesurfer] FS6 DEV Hippocampal Subfield Error
Hi FS Experts,
When I tried to segment the subfields using the Dev version on subjects that
have been previously processed with v5.3, I get the following error:
INFO: FreeSurfer build stamps do not match
Subject Stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0
Current Stamp: freesurfer-Darwin-mavericks-dev-20150522
INFO: SUBJECTS_DIR is /Users/MacPro/Documents/FS6_hipposubfields_long
Actual FREESURFER_HOME /Applications/freesurfer6
-rw-rw-r-- 1 MacPro staff 1702954 May 6 11:11
/Users/MacPro/Documents/FS6_hipposubfields_long/JT_D372A_3D_A/scripts/recon-all.log
Darwin dhcp-172-17-49-145.wrd.wireless.private.cam.ac.uk 14.0.0 Darwin Kernel
Version 14.0.0: Fri Sep 19 00:26:44 PDT 2014;
root:xnu-2782.1.97~2/RELEASE_X86_64 x86_64
INFO: current FREESURFER_HOME does not match that of previous processing.
Current: /Applications/freesurfer6
Previous: /Users/fkm24/freesurfer/
#--------------------------------------------
#@# Hippocampal Subfields processing (T1 only) left Thu May 28 00:34:04 BST
2015
\n /Applications/freesurfer6/bin/segmentSF_T1.sh
/Applications/freesurfer6/MCRv80 /Applications/freesurfer6 JT_D372A_3D_A
/Users/MacPro/Documents/FS6_hipposubfields_long left \n
See log file:
/Users/MacPro/Documents/FS6_hipposubfields_long/JT_D372A_3D_A/scripts/hippocampal-subfields-T1.log
------------------------------------------
Setting up environment variables
---
DYLD_LIBRARY_PATH is
/Applications/freesurfer6/lib/gcc/lib:.:/Applications/freesurfer6/MCRv80/runtime/maci64:/Applications/freesurfer6/MCRv80/bin/maci64:/Applications/freesurfer6/MCRv80/sys/os/maci64
dyld: Library not loaded: @rpath/libmwi18n.dylib
Referenced from:
/Applications/freesurfer6/bin/segmentSubjectT1_autoEstimateAlveusML.app/Contents/MacOS/segmentSubjectT1_autoEstimateAlveusML
Reason: image not found
/Applications/freesurfer6/bin/run_segmentSubjectT1_autoEstimateAlveusML.sh:
line 40: 54963 Trace/BPT trap: 5
"${exe_dir}"/segmentSubjectT1_autoEstimateAlveusML.app/Contents/MacOS/segmentSubjectT1_autoEstimateAlveusML
$args
#--------------------------------------------
#@# Hippocampal Subfields processing (T1 only) right Thu May 28 00:34:04 BST
2015
\n /Applications/freesurfer6/bin/segmentSF_T1.sh
/Applications/freesurfer6/MCRv80 /Applications/freesurfer6 JT_D372A_3D_A
/Users/MacPro/Documents/FS6_hipposubfields_long right \n
See log file:
/Users/MacPro/Documents/FS6_hipposubfields_long/JT_D372A_3D_A/scripts/hippocampal-subfields-T1.log
------------------------------------------
Setting up environment variables
---
DYLD_LIBRARY_PATH is
/Applications/freesurfer6/lib/gcc/lib:.:/Applications/freesurfer6/MCRv80/runtime/maci64:/Applications/freesurfer6/MCRv80/bin/maci64:/Applications/freesurfer6/MCRv80/sys/os/maci64
dyld: Library not loaded: @rpath/libmwi18n.dylib
Referenced from:
/Applications/freesurfer6/bin/segmentSubjectT1_autoEstimateAlveusML.app/Contents/MacOS/segmentSubjectT1_autoEstimateAlveusML
Reason: image not found
/Applications/freesurfer6/bin/run_segmentSubjectT1_autoEstimateAlveusML.sh:
line 40: 55000 Trace/BPT trap: 5
"${exe_dir}"/segmentSubjectT1_autoEstimateAlveusML.app/Contents/MacOS/segmentSubjectT1_autoEstimateAlveusML
$args
#------------------------------------------
Started at Thu May 28 00:34:01 BST 2015
Ended at Thu May 28 00:34:04 BST 2015
#@#%# recon-all-run-time-hours 0.001
recon-all -s JT_D372A_3D_A finished without error at Thu May 28 00:34:05 BST
2015 Any help is greatly appreciated, many thanks!
Best Wishes,
Elijah
--
Elijah Mak,
PhD Candidate | Psychiatry
University of Cambridge
Trinity College, Cambridge, CB2 1TQ
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