Hello, Thank you for the feedback. I have updated the system so that future dev build will contain that library. That said, the mavericks build (the one you used for this subject) probably won't be released as it doesn't seem to provide and benefit over the lion build, which has been tested and shown to be compatible up to OS X Yosemite.
The lion dev build currently contains that library, so it *should* work with that subject. If you wanted to process that subject with the dev version, your options are to either 1) Download and install the lion build, or 2) wait till tonights build is complete and redownload and reinstall the mavericks build. https://surfer.nmr.mgh.harvard.edu/fswiki/Download -Zeke > Hi Freesurfer Experts, > > I have installed the dev version to test recon-alls on some subjects, but > I > am running into the following error at the transformation stage. See below > for the error message: > > /Applications/freesurfer6/bin/talairach_avi > > --i orig_nu.mgz --xfm transforms/talairach.auto.xfm --atlas > 3T18yoSchwartzReactN32_as_orig > > $Id: talairach_avi,v 1.11 2015/01/13 20:22:51 nicks Exp $ > > Darwin dhcp-172-17-49-145.wrd.wireless.private.cam.ac.uk 14.0.0 Darwin > Kernel Version 14.0.0: Fri Sep 19 00:26:44 PDT 2014; > root:xnu-2782.1.97~2/RELEASE_X86_64 x86_64 > > Thu May 28 00:01:12 BST 2015 > > mri_convert orig_nu.mgz talsrcimg.img > > $Id: mri_convert.c,v 1.221 2015/04/16 18:56:00 greve Exp $ > > reading from orig_nu.mgz... > > TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 > > i_ras = (-1, 0, 0) > > j_ras = (0, 0, -1) > > k_ras = (0, 1, 0) > > writing to talsrcimg.img... > > Analyze Output Matrix > > -1.00000 0.00000 0.00000 128.00000; > > 0.00000 0.00000 1.00000 -128.00000; > > 0.00000 -1.00000 0.00000 130.00000; > > 0.00000 0.00000 0.00000 1.00000; > > -------------------- > > INFO: set hdr.hist.orient to -1 > > mpr2mni305 talsrcimg > > Thu May 28 00:01:13 BST 2015 > > /Applications/freesurfer6/bin/mpr2mni305 talsrcimg > > $Id: mpr2mni305,v 1.4 2009/06/03 16:01:38 nicks Exp $ > > target=3T18yoSchwartzReactN32_as_orig > > > --------------------------------------------------------------------- > > analyzeto4dfp talsrcimg -O0 -y > > --------------------------------------------------------------------- > > > $Id: ifh2hdr.c,v 1.3 2007/05/05 10:45:03 nicks Exp $ > > Thu May 28 00:01:13 2015 > > Writing: talsrcimg.4dfp.hdr > > $Id: analyzeto4dfp.c,v 1.2 2007/05/05 00:00:06 nicks Exp $ > > Reading: talsrcimg.hdr > > header size 348 bytes > > hdr.dime.datatype offset=70 value=2 > > hdr.dime.bitpix offset=72 value=8 > > hdr.hist.orient offset=252 value=-1 > > dimensionality 4 > > dimensions 256 256 256 1 > > Reading: talsrcimg.img > > Writing: talsrcimg.4dfp.img > > Writing: talsrcimg.4dfp.ifh > > ifh2hdr talsrcimg -r0to255 > > ori=2 > > > --------------------------------------------------------------------- > > gauss_4dfp talsrcimg 1.1 > > --------------------------------------------------------------------- > > > dyld: Library not loaded: /usr/local/lib/libgfortran.3.dylib > > Referenced from: /Applications/freesurfer6/bin/gauss_4dfp > > Reason: image not found > > Trace/BPT trap > > ERROR: 'gauss_4dfp talsrcimg 1.1' failed! status=133 > > ERROR: mpr2mni305 execution aborted > > > Any idea what is happening? There were no such problems in the recon-all > with the earlier v5.3 build. > > Thanks a lot for your help. > > Best Wishes, > > Elijah > > -- > > Elijah Mak, Gates Scholar > > PhD Candidate *|* Psychiatry > > University of Cambridge > > Trinity College, Cambridge, CB2 1TQ > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
