*Dear Freesurfer experts,*
I am conducting cortical thickness analysis using freesurfer-5.3.0 and have received the error message "*Error in Analyze: command failed: mri_concat /" *when clicking the 'Analyze' button in order to run a qdec group analsysis (please see the output below). Prior to this I have run < recon-all –s subject –qcache > for all my subjects and I have add a copy of fsaverage into my SUBJECTS_DIR (using the command < [ -L fsaverage ] || ln –nfs $FREESURFER_HOME/subjects/fsaverage >). Uploading of the data table has been successful, too. I would be very grateful for your comments. Yours sincerely, Annemarie $ bugr FREESURFER_HOME: /apps/prod/x86_64/freesurfer-5.3.0 Build stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 Debian version: 7.8 Kernel info: Linux 3.12.38-ql-generic-50 x86_64 SUBJECTS_DIR: '/data/projects/oertelmatura/Neurodegeneration_Alte/Annemarie_Qdec' Error message: aparcstats2table --hemi rh --parc aparc.a2009s --meas meancurv --tablefile /data/projects/oertelmatura/Neurodegeneration_Alte/Annemarie_Qdec/qdec/stats_tables//rh.aparc.a2009s.meancurv.stats.dat --subjects AB39_mdeft. AB48_mdeft. BS39_mdeft. CB46_mdeft. CR55_mdeft. EB48_mdeft. EG47_mdeft. EH44_mdeft. GU46_mdeft. HT36_mdeft. IB34_mdeft. IS47_mdeft. JW39_mdeft. KM42_mdeft. KU44_mdeft. KW35_mdeft. LD50_mdeft. MB53_mdeft. MG43_mdeft. MR49_mdeft. AS36_mdeft. CM41_mdeft. EB35_mdeft. EF42_mdeft. EF53_mdeft. EL52_mdeft. EN34_mdeft. ER52_mdeft. ES54_mdeft. GE54_mdeft. HA49_mdeft. JM36_mdeft. LR48_mdeft. MP41_mdeft. MS36_mdeft. MS38_mdeft. MS54_mdeft. RK48_mdeft. WK39_mdeft. EH40_mdeft. SUBJECTS_DIR : /data/projects/oertelmatura/Neurodegeneration_Alte/Annemarie_Qdec Parsing the .stats files Building the table.. Writing the table to /data/projects/oertelmatura/Neurodegeneration_Alte/Annemarie_Qdec/qdec/stats_tables//rh.aparc.a2009s.meancurv.stats.dat Completed creation of aseg and aparc stats data tables. lh-Avg-Intercept-thickness ----------------------- Does the average thickness differ from zero? 1.000 1.000; lh-Diff-0-1-Intercept-thickness ----------------------- Does the average thickness differ between 0 and 1? 1.000 -1.000; ninputs = 42 Checking inputs ERROR: could not find volume healthy. Does it exist? ERROR: reading healthy *Error in Analyze: command failed: mri_concat /*data/projects/oertelmatura/Neurodegeneration_Alte/Annemarie_Qdec/AB39_mdeft./surf/lh.thickness.fwhm10.fsaverage.mgh /data/projects/oertelmatura/Neurodegeneration_Alte/Annemarie_Qdec/AB48_mdeft./surf/lh.thickness.fwhm10.fsaverage.mgh /data/projects/oertelmatura/Neurodegeneration_Alte/Annemarie_Qdec/BS39_mdeft./surf/lh.thickness.fwhm10.fsaverage.mgh /data/projects/oertelmatura/Neurodegeneration_Alte/Annemarie_Qdec/CB46_mdeft./surf/lh.thickness.fwhm10.fsaverage.mgh /data/projects/oertelmatura/Neurodegeneration_Alte/Annemarie_Qdec/CR55_mdeft./surf/lh.thickness.fwhm10.fsaverage.mgh /data/projects/oertelmatura/Neurodegeneration_Alte/Annemarie_Qdec/EB48_mdeft./surf/lh.thickness.fwhm10.fsaverage.mgh /data/projects/oertelmatura/Neurodegeneration_Alte/Annemarie_Qdec/EG47_mdeft./surf/lh.thickness.fwhm10.fsaverage.mgh /data/projects/oertelmatura/Neurodegeneration_Alte/Annemarie_Qdec/EH44_mdeft./surf/lh.thickness.fwhm10.fsaverage.mgh /data/projects/oertelmatura/Neurodegeneration_Alte/Annemarie_Qdec/GU46_mdeft./surf/lh.thickness.fwhm10.fsaverage.mgh /data/projects/oertelmatura/Neurodegeneration_Alte/Annemarie_Qdec/HT36_mdeft./surf/lh.thickness.fwhm10.fsaverage.mgh /data/projects/oertelmatura/Neurodegeneration_Alte/Annemarie_Qdec/IB34_mdeft./surf/lh.thickness.fwhm10.fsaverage.mgh /data/projects/oertelmatura/Neurodegeneration_Alte/Annemarie_Qdec/IS47_mdeft./etc.
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