You may need to reinstall XQuartz and/or fix symlinks:
e.g.: sudo ln -s /opt/X11 /usr/X11R6 ; sudo ln -s /opt/X11 /usr/X11
-Aaron Schultz
> On Jun 8, 2015, at 9:31 AM, Bruce Fischl <[email protected]> wrote:
>
> Hi Joana
>
> have you added $FREESUFER_HOME/bin to your path? Have you sourced
> $FREESURFER_HOME/SetUpFreeSurfer.csh?
>
> cheers
> Bruce
>
>
> On Mon, 8 Jun 2015, Joana Braga Pereira wrote:
>
>> Dear all,
>>
>> I've downloaded freesurfer and installed it on mac (v 10.10.2).
>>
>> After running the recon-all pipeline on a subject, I opened tkmedit subj001
>> brainmask.mgz -surfs and the following message came out: -bash: tkmedit:
>> command not found.
>>
>> I can open the same subject with freeview without any problems.
>>
>> Could someone advise me how to solve this?
>>
>> I tried to modify the bash file but it didn't work.
>>
>> Many thanks
>>
>>
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