You can probably use the csdbase.y.ocn.dat file. Run mri_glmfit-sim --help to get more info
On 06/19/2015 10:18 AM, Andrew Schoen wrote: > Hi, > > I have run some analyses using the GLM and cluster wise correction for > multiple comparisons outlined here: > http://freesurfer.net/fswiki/FsTutorial/GroupAnalysis > > For easy visualization of the groups, I was hoping to use the .annot > file created in the cluster wise correction step to extract values > for each subject and create scatter plots. However, as I understand > it, the .annot file created here exists only for fsaverage. Is there > a way to warp the .annot file to each subject (something > like mri_surf2surf), so as to run something like aparcstats2table > and extract the values? Or, is there a way to utilize the smoothed > concatenated file (from mris_preproc) to get at the same thing? > > Thanks! > > Andrew Schoen > University of Wisconsin - Madison > > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
