If you can you upload your subject on our website and email us the exact
command lines you used, we will take a look.
Bruce
On Wed, 8 Jul 2015, Matteo Bastiani wrote:
Nope.
On 8 Jul 2015, at 17:06, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote:
do you have access to the surfaces before they were converted to gii?
On Wed, 8 Jul 2015, Matteo Bastiani wrote:
Hi Bruce,
yes. With both surfaces (the original hcp '*.pial.surf.gii’ and the one I
obtain using mris_converted '*.pial') I have the same results.
To convert the original hcp gift surface into freesurfer format, I use:
mris_convert subjId.surf,gii subjId.pial
Is that the correct way?
Cheers,
Matteo
On 8 Jul 2015, at 16:52, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote:
Hi Matteo
what happens if you use our surface format? Does it work properly?
Bruce
On Wed, 8 Jul 2015, Matteo Bastiani wrote:
Hi all,
I have been trying to use the mris_fill function on some Human connectome
project data.
I firstly convert the .gii file containing the pial surface using mris_convert.
When visualising the converted mesh into FreeView everything looks normal.
After the first step (“mris_fill -c -r 1”), though, the reconstructed filled
volume does not look correct. The axes are flipped (anterior-posterior becomes
superior-inferior) and the volume itself is “cut” at the edges.
Does anybody know why that happen?
Best,
Matteo
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