Hi Doug, There is an fmcpr.mcdat file. However we use fmc.mcdat in a script that calculates average displacement during each run. I will run the commands again using -per-session, thanks!
Do you know why our other runs would have a fmc.mcdat but not these? We've never run our commands using -per-session before. Thanks, Anais ________________________________________ From: [email protected] [[email protected]] on behalf of Douglas N Greve [[email protected]] Sent: Friday, July 10, 2015 11:24 AM To: [email protected] Subject: Re: [Freesurfer] fmc.mcdat file missing Is there an fmcpr.mcdat file? That is the one produced with using -per-run (fmc.mcdat is for -per-session) On 07/10/2015 11:16 AM, Rodriguez-Thompson, Anais wrote: > Hi Freesurfer experts, > > Currently I'm having issues generating a fmc.mcdat file for one of my > subjects. We had previously unpacked and preprocessed a resting run for > NNC0101 (/cluster/roffman/users/Stable5_PerRun/NNC0101/resting/004), which > does have this file. I just recently unpacked two more resting runs (021 and > 022), which do not have this file despite pre-processing the runs. I have a > file called fmcpr.mcdat, but not fmc.mcdat. > > These are the commands I ran (working in 5.3): > > recon-all -autorecon-all -s NNC0101 > preproc-sess -s NNC0101 -d $SUBJECTS_DIR -fsd resting -fwhm 5 -per-run > register-sess -s NNC0101 -d $SUBJECTS_DIR -per-run -fsd resting > > I also ran a mc-sess command to try to generate this file (although I think > it usually is generated during preproc-sess): > > mc-sess -s NNC0101 -d $SUBJECTS_DIR -fsd resting -per-run > > Do you know why I'm missing this file and how I can generate it? > > Thanks for your help! > > Anais > > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
