Hi Alison, what are your new errors (the ones you get almost immediately)? Cheers, Eugenio
Juan Eugenio Iglesias Postdoctoral researcher BCBL www.jeiglesias.com www.bcbl.eu Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer ----- Original Message ----- From: "Alison Austermuehle (NIH/NINDS) [F]" <alison.austermueh...@nih.gov> To: freesurfer@nmr.mgh.harvard.edu Sent: Monday, July 20, 2015 6:02:38 PM Subject: [Freesurfer] mac installation problems Hi, I am a new user of freesurfer. I have been running freesurfer on a Linux machine to look at hippocampal subfield volumes, but am now trying to switch over to a mac. I have installed the program, and it is located within /Applications/freesurfer. Ran the freesurfer source and export. When I tried to test the bert recon, I get this message: ERROR: you do not have write permission to /Applications/freesurfer/subjects/bert When I do what the wiki suggests for admin issues ( sudo chmod -R a+w $FREESURFER_HOME/subjects/bert) , and try recon-all again, it quits with errors almost immediately. Note: I have full admin privileges on this computer. My goal is to take a folder with a long list of .dcm files and run a recon-all on it, which is currently on my desktop. Where does this folder need to be? Where is my subject directory? If someone with patience and generosity in their heart could help me out, using idiot-proof language, I would really appreciate it. Thanks, Alison Austermuehle NIH/NINDS _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
