Great, thank you for your help! On 8/4/15, 2:36 PM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N Greve" <freesurfer-boun...@nmr.mgh.harvard.edu on behalf of gr...@nmr.mgh.harvard.edu> wrote:
>Yes, it is for 12dof. It is not hidden for any particular purpose >(except maybe that I'm lazy). In general, I don't think it is a good >idea to use 12 or 9 dof unless you have an explicit reason to. > >On 08/04/2015 01:54 PM, Perea Camargo, Rodrigo Dennis wrote: >> Hi all, >> I am using a previous script to update a pipeline for pre-processing >> diffusion data. My objective related to this question is the (what I >> think is a hidden) argument ³- -12² when using bbregister (v. 1.49.2.3 >> FreeSurfer 5.3). Will this denote 12 degrees of freedom for my >> registration? If so, why is this argument hidden (not in the manual or >> --help) and what are your insights when registering diffusion data to >> the Freesurfer T1 image? Should I keep 12dof or just do a simple rigid >> body registraion (e.g. 6 dof) >> >> Thanks in advance for your response, >> Rodrigo >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >-- >Douglas N. Greve, Ph.D. >MGH-NMR Center >gr...@nmr.mgh.harvard.edu >Phone Number: 617-724-2358 >Fax: 617-726-7422 > >Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >www.nmr.mgh.harvard.edu/facility/filedrop/index.html >Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > >_______________________________________________ >Freesurfer mailing list >Freesurfer@nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
