Sorry, didn't get anything! Did you use me as the recipient (ayendiki)?
On Thu, 13 Aug 2015, Leora Amira wrote:
Dear Anastasia,
I send (uploaded) the files on Monday. Could you please confirm that they
arrived.
Thank you so very much for looking into it.
Leora.
Leora Amira, PhD
Columbia University
NYS Psychiatric Institute
Division of Child and Adolescent Psychiatry
1051 Riverside Drive
New York, NY 10032
amir...@nyspi.columbia.edu
Office: 646-774-5820
On 8/7/15, 6:17 PM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of
Anastasia Yendiki" <freesurfer-boun...@nmr.mgh.harvard.edu on behalf of
ayend...@nmr.mgh.harvard.edu> wrote:
Hi Leora - I regret to inform you that it's the processing that has
failed, pretty much for all the tracts. I'm guessing it's an earlier
preprocessing (likely registration) step that has failed.
If you upload the tracula output directories (dmri, dlabel, dpath) of your
subject for me here, I'll take a look:
https://gate.nmr.mgh.harvard.edu/filedrop2/
Please also send your trac-all.log. Thanks!
a.y
On Fri, 24 Jul 2015, Leora Amira wrote:
Thank you very much.
From: Leora Amira <amir...@nyspi.columbia.edu>
Date: Thursday, July 23, 2015 at 2:21 PM
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: Issues with first attempt in viewing Tracula output
Hi,
This is my first time using Tracula. I processed a large number of
subjects¹ DTI scans and am now viewing the results in
Freeview (I copied the commands from Tracula wiki tutorial).
The images look somewhat peculiar in several ways. I am attaching
screenshots with a few questions.
1. All my images look jaggedy and not smooth and beautiful like in the
Tracula wiki tutorialŠ. (image 1: ilf)[IMAGE]
2. Tracts are truncated: Corpus callosum forceps are not complete
(image 2)[IMAGE]
3. Tracts are displaced: Corpus callosum forceps are displaced and out
of the brain template (image 3)[IMAGE]
4. All tracts seem truncated and not exactly in the right place (image
4[IMAGE]
Are the errors in the viewing or, I so hope not, in the processing? And
if so, what might be the errors and how to correct
them?
Thank you very much.
Grateful.
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