I would probably use bbregister to register the volumes, then use mri_surf2surf with the --reg option to map the surfaces from one space to another.
On 8/14/15 1:59 PM, Hibert, Matthew Louis wrote: > Hi Bruce, > My goal is to compare the surfaces and segmentations from the reconstructions > of the images from the 2 head coils. I'd like to be able to visualize the > surfaces from both scans/coils on the same structural image. > > Thanks, > Matt > ________________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl > [fis...@nmr.mgh.harvard.edu] > Sent: Friday, August 14, 2015 12:31 PM > To: Freesurfer support list > Subject: Re: [Freesurfer] registering 2 scans > > Hi Matt > can you tell us what your goal is for this analysis? You could use the > longitudinal tools depending on what you are up to > > cheers > Bruce > > > On Fri, 14 Aug 2015, > Hibert, Matthew Louis wrote: > >> Hi Freesurfers, >> I've scanned the same subject with 2 different head coils and reconstructed >> the memprage's from each coil with freesurfer. I'd now like to register >> these two reconstructions to each other, both the volumes and the surfaces. >> I've generated an lta registration matrix using mri_robust_register but am >> unsure how to apply this to other files. Is there a way to apply a >> registration matrix to all volume and surface files from a freesurfer >> reconstruction? Is there a better way to accomplish this? >> >> Thanks, >> Matt >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
