Hi - I've encountered an error in step 8 of the functional connectivity analysis.
here is some of the information requested with errors: FREESURFER_HOME: /Volumes/projects/painimaging/Bishop/FreeSurfer_R01/freesurfer Build stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0 Kernel info: Darwin 14.0.0 x86_64 --------------------------------------------------------------------- Please include the following additional information in your report: 1) subject name: B113v1 2) the entire command-line executed: selxavg3-sess -s B113v1 -a fc.linsulaseed.surf.lh %<step 7 code was: mkanalysis-sess -analysis fc.linsulaseed.surf.lh -surface fsaverage lh -fwhm 5 -notask -taskreg L_Insula.dat 1 -nuisreg vcsf.dat 5 -nuisreg wm.dat 5 -mcextreg -polyfit 5 -nskip 4 -fsd rest -TR 2 -per-session %which completed successfully> 3) the error message generated :Started at Wed Aug 12 12:56:41 EDT 2015 Ended at Wed Aug 12 13:11:49 EDT 2015 preproc-sess done ------------------------------------------- /Volumes/projects/painimaging/Bishop/FreeSurfer_R01/Project/B113v1 Wed Aug 12 13:11:50 EDT 2015 anadir = /Volumes/projects/painimaging/Bishop/FreeSurfer_R01/Project/B113v1/rest/fc.linsulaseed.surf.lh DoGLMFit = 1 DoContrasts = 1 UpdateNeeded = 1 ------------------------------------------ ------- matlab output -------------------- matlab: Command not found. ------------------------------------------ ERROR: fast_selxavg3() failed\n 4) optionally include the subject's /script/recon-all.log: I included the recon-all.log and selxavg3-sees-rest-fc...log On A previous post I saw the command which matlab was asked: below is the result when I entered it:which matlab matlab: Command not found. Thanks for assistance, chaz _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
