Dear Michael, Thank you very much for your fast reply. Sorry for bothering you, I had not seen the FAQ entry. Sorry and thank you again,
Leonardo Tozzi Research Fellow Discipline of Psychiatry Trinity College Institute of Neuroscience College Green Dublin 2 Ireland Office: +35318964234 Mobile: +353851026166 On 8 Sep 2015, at 14:44, Harms, Michael <mha...@wustl.edu<mailto:mha...@wustl.edu>> wrote: Hi, That's expected behavior in the hippocampus/amygdala. See the following FAQ entry: https://surfer.nmr.mgh.harvard.edu/fswiki/UserContributions/FAQ#Q.Thesurfacesnearthemedialwall.2Chippocampus.2Candamygdalaaren.27taccuratelyfollowingthestructuresthere.HowcanIfixthis.3F cheers, -MH -- Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: mha...@wustl.edu<mailto:mha...@wustl.edu> From: Leonardo Tozzi <toz...@tcd.ie<mailto:toz...@tcd.ie>> Reply-To: "freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>" <freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> Date: Tuesday, September 8, 2015 3:52 AM To: "freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>" <freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: [Freesurfer] Freesurfer removing hippocampus and temporal lobe To Whom it may concern, I have been running Freesurfer to segment grey matter on my data, but I have noticed that in each of my subjects it seems to “cut off” the grey matter in the temporal lobe/hippocampus. I could correct this manually in each subject, but is there a fix you would suggest to make it include this area across all my data? I attach some screenshots of the problem for your perusal. I am currently using the following build: freesurfer-Darwin-lion-stable-pub-v5.3.0, on an iMac running OSX Yosemite, 2.9 GHz Intel Core i5, 8GB RAM 1600 MHz DDR3. Thank you very much for your help. Yours faithfully, Leonardo Tozzi Research Fellow Discipline of Psychiatry Trinity College Institute of Neuroscience College Green Dublin 2 Ireland Office: +35318964234 Mobile: +353851026166 <Screen Shot 2015-09-04 at 10.37.24.png><Screen Shot 2015-09-04 at 10.58.10.png><Screen Shot 2015-09-04 at 10.58.16.png><Screen Shot 2015-09-04 at 10.58.30.png><Screen Shot 2015-09-04 at 10.58.04.png> ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. <Screen Shot 2015-09-04 at 10.37.24.png><Screen Shot 2015-09-04 at 10.58.10.png><Screen Shot 2015-09-04 at 10.58.16.png><Screen Shot 2015-09-04 at 10.58.30.png><Screen Shot 2015-09-04 at 10.58.04.png>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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