Hi John
what parts of the basal ganglia do you want? We label
caudate/putamen/pallidum/accumbens separately. You can combine them all
together and get one ROI if you want. They should all be in the wmparc.mgz
cheers
Bruce
On Mon, 21 Sep 2015, John Anderson
wrote:
Hi Experts,
I want to do tractography for the cortico spinal tract between two ROIs ( ROI1:
precentral gyrus;
ROI2: basal ganglia). I created the first ROI using mask form wmparc.mgz. How
can I create mask for
the basal ganglia ( there is no label for it). Do I need to segmenta the basal
ganglia separatly? Is
there any tool in Freesurfer that can help? Thanks for any suggestion.
Bests,
John Anderson
Senior Research Associate
Psychological and Brain Sciences Dept.
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834
Fax: +1 (603) 646-1419
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