I can't understand what you are asking. Can you elaborate? On 09/28/2015 01:51 PM, Ali Radaideh wrote: > Thanks alot Douglas, > > Yes it is there but after checking it many time I found it corrupted > for some subjects due to copying them many times between machines. > > But May I ask you some thing related. I have just posted a question > regarding getting the cortical thickness after running the surf2surf > command (17 networks cortical parcellation). Now I found the stats > file not updated after running this command only the annotation files > in label folder. [rh.Yeo2011_17Networks_N1000.annot]. We thought that > using Yeo Atlas will give slightly different cortical thickness, are > we correct? > > Thanks, > Ali > > On Mon, Sep 28, 2015 at 8:27 PM, Douglas N Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > does that file exist? > > On 09/28/2015 01:05 PM, Ali Radaideh wrote: > > Dear FreeSurfer experts, > > After finishing the recon-all, I am trying to extract the cortical > > thickness for each subject and group them into one table but > > unfortunately i keep getting the following error: > > > > rh.aparc.DKTatlas40.stats is not found or is too small to be a > valid > > statsfile > > Use --skip flag to automatically skip bad stats files > > > > i tried to change the stats file (e.g I used aparc.a2009s) but I got > > the same error. > > > > I tried each brain alone and also got the same error. > > > > Any ideas please > > Thanks, > > Ali > > > > -- > > /Ali M. Al-Radaideh. PhD > > Head of Department of Medical Imaging > > Vice Dean of the Faculty of Allied Health Sciences > > The Hashemite University, > > Zarqa, Jordan > > W.phone +962 5 3903333 ext.5422, 5355, 5364 > > Email: ali.radai...@hu.edu.jo <mailto:ali.radai...@hu.edu.jo> > <mailto:ali.radai...@hu.edu.jo <mailto:ali.radai...@hu.edu.jo>> > > / > > /webpage: http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM=/ > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to > whom it is > addressed. If you believe this e-mail was sent to you in error and > the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > > > > -- > /Ali M. Al-Radaideh. PhD > Head of Department of Medical Imaging > Vice Dean of the Faculty of Allied Health Sciences > The Hashemite University, > Zarqa, Jordan > W.phone +962 5 3903333 ext.5422, 5355, 5364 > Email: ali.radai...@hu.edu.jo <mailto:ali.radai...@hu.edu.jo> > / > /webpage: http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM=/ > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
