Thanks for you reply, Rudolph. We have a cluster environment in our university, and the best Ubuntu version to us for now is Ubuntu 12.04 (in a closest future we will update to a newer version, but not now...).
In the download page there is only FreeSurfer for CentOS, Mac and a Virtual Machine of Xubuntu, but not to Ubuntu. ( https://surfer.nmr.mgh.harvard.edu/fswiki/Download ) I couldn't find the binaries to compile, too. I've looked at ( http://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/ ). To me the best choice is the binaries or the compiled source (not apt, yum, etc..) , because we put all applications in "/usr/local". Could you help me to find one of these options to download? Thanks again -- Att, Bruno Bragança Mendes Laboratório de Alto Desempenho LAD/PUCRS Av. Ipiranga, 6681 - Prédio 32 Térreo - Sala 120 +55 51 33538001 2015-10-01 18:40 GMT-03:00 Rudolph Pienaar <rudolph....@gmail.com>: > Yes, FreeSurfer can be installed on Ubuntu without any issues. There is > also no functional difference between Ubuntu server and Ubuntu Desktop. > > Do you have a compelling reason for wanting to use Ubuntu 12.04? It was > released in 2012 and is rather ancient in Ubuntu terms. The current > version of Ubuntu is 15.04 and in fact 15.10 is about to released in > three weeks. > > I'd strongly recommend you update to a modern Ubuntu. > > Having said that, certainly on Ubuntu 14.04 and above, once installed > you need to simply symlink some libraries since the versions FreeSurfer > has been compiled against are depreciated on Ubuntu 14.04 and later. > > In a terminal, simply type (make sure that each command is on a single > line -- the email formatting might have split it in two): > > For Trackvis and dtk > > sudo ln -s /usr/lib/x86_64-linux-gnu/libtiff.so.5 > /usr/lib/x86_64-linux-gnu/libtiff.so.3 > > sudo ln -s /usr/lib/x86_64-linux-gnu/libmng.so.2.0.2 > /usr/lib/x86_64-linux-gnu/libmng.so.1 > > For FreeSurfer: > > sudo ln -s /usr/lib/x86_64-linux-gnu/libvnl_algo.so > /usr/lib/x86_64-linux-gnu/libvnl_algo.so.1.14 > > sudo ln -s /usr/lib/x86_64-linux-gnu/libvnl.so > /usr/lib/x86_64-linux-gnu/libvnl.so.1.14 > > sudo ln -s /usr/lib/x86_64-linux-gnu/libv3p_netlib.so > /usr/lib/x86_64-linux-gnu/libv3p_netlib.so.1.14 > > HTH > -=R > > On 10/1/15 15:58 , Bruno LAD wrote: > > Hi, could you help me please, because a couldn't find the answer for my > > question in the wiki. > > > > Can FreeSurfer be installed on ubuntu server 12.04? How can I do it, if > > it's possible? > > > > > > Thank you. > > > > -- > > Best Regards > > Bruno Bragança Mendes > > Laboratório de Alto Desempenho LAD/PUCRS > > Av. Ipiranga, 6681 - Prédio 32 Térreo - Sala 120 > > +55 51 33538001 <tel:%2B55%2051%2033538001> > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to whom > it is > > addressed. If you believe this e-mail was sent to you in error and the > e-mail > > contains patient information, please contact the Partners Compliance > HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to you > in error > > but does not contain patient information, please contact the sender and > properly > > dispose of the e-mail. > > > > > -- > Rudolph Pienaar, M.Eng, D.Eng / email: rudo...@nmr.mgh.harvard.edu > MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging > 149 (2301) 13th Street, Charlestown, MA 02129 USA > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
