Thanks Douglas Now it's ok.
I checked the OSX version. My OSX version was 10.9.5. I removed the XQuartz 2.7.7 and installed 2.7.5 I run this command is below recon-all -all -i /Volumes/yang/S002_AD1118_20090116/NCKU-0003-0000-00001.dcm -s S002_20151005 ( remove -sd and -ba_labels) thank you for your help. Ting-Jui On Sat, Oct 3, 2015 at 2:59 AM, Douglas Greve <gr...@nmr.mgh.harvard.edu> wrote: > Try removing -ba_labels (it will do that with -all anyway) > > > On 9/29/15 9:02 PM, 葉丁瑞 wrote: > > Dear All, > > I ran the following script: > > recon-all -i /Volumes/yang/S002_AD1118_20090116/NCKU-0003-0000-00001.dcm -s > S002_ba -sd /Volumes/yang/S002_AD1118_20090116/ -all -ba_labels > > and got the error below at the end. Could anybody please let me know how to > fix it. > > --- > > SUBJECTS_DIR /Volumes/yang/S002_AD1118_20090116 > > FREESURFER_HOME /Applications/freesurfer > > Loading source label. > > No such file or directory > > ERROR reading /Volumes/yang/S002_AD1118_20090116/fsaverage/label/lh.BA1.label > > Darwin MRI2deiMac.local 13.4.0 Darwin Kernel Version 13.4.0: Wed Mar 18 > 16:20:14 PDT 2015; root:xnu-2422.115.14~1/RELEASE_X86_64 x86_64 > > recon-all -s S002 exited with ERRORS at Sat Sep 26 21:57:00 CST 2015 > > For more details, see the log file > /Volumes/yang/S002_AD1118_20090116/S002/scripts/recon-all.log > > To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > --- > > I follow the below step at freesurfer message board > > cd /Volume/yang > > ln -s /Applications/freesurfer/subjects/fsaverage > > recon-all -i /Volumes/yang/S002_AD1118_20090116/NCKU-0003-0000-00001.dcm -s > S002_ba -sd /Volumes/yang/S002_AD1118_20090116/ -all -ba_labels > > but the error is not resoled. please see attached file below > > my environment for Freesurfer/FS-FAST > > -------- freesurfer-Darwin-lion-stable-pub-v5.3.0 -------- > > Setting up environment for FreeSurfer/FS-FAST (and FSL) > > FREESURFER_HOME /Applications/freesurfer > > FSFAST_HOME /Applications/freesurfer/fsfast > > FSF_OUTPUT_FORMAT nii.gz > > SUBJECTS_DIR /Applications/freesurfer/subjects > > MNI_DIR /Applications/freesurfer/mni > > FSL_DIR /usr/local/fsl > > Thank you, > > TING-JUI YEH > > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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