Hi Doug, sorry to be a bother, this doesn't work on my machine, running: file mri_surf2vol.mac64
gets me: mri_surf2vol.mac64: ELF 64-bit LSB executable, x86-64, version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux 2.4.0, not stripped Cheers, *Dr Kevin Aquino* Research fellow, Sir Peter Mansfield Magnetic Resonance Center, The University of Nottingham. Honorary Research Fellow School of Physics, Faculty of Science, University of Sydney *E* kevin.aqu...@nottingham.ac.uk, aqu...@physics.usyd.edu.au | *W* www.physics.usyd.edu.au/~aquino/ ---------------------------------------------- The brain is a wonderful organ. It starts working the moment you get up and does not stop until you get into the office. - Robert Frost CRICOS 00026A This email plus any attachments to it are confidential. Any unauthorised use is strictly prohibited. If you receive this email in error, please delete it and any attachments. Please think of our environment and only print this e-mail if necessary. On Tue, Oct 6, 2015 at 12:35 AM, Douglas Greve <gr...@nmr.mgh.harvard.edu> wrote: > here you go > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_surf2vol.mac64 > > > On 10/5/15 11:24 AM, Kevin Aquino wrote: > > Hi Doug, > > Thanks for the file, do you happen to have one that is compiled for a > 64bit mac installation of freesurfer? > > Cheers! > > Cheers, > > > *Dr Kevin Aquino* > Research fellow, > Sir Peter Mansfield Magnetic Resonance Center, The University of > Nottingham. > > Honorary Research Fellow > School of Physics, Faculty of Science, University of Sydney > > *E* kevin.aqu...@nottingham.ac.uk, aqu...@physics.usyd.edu.au | *W* > www.physics.usyd.edu.au/~aquino/ > <http://www.physics.usyd.edu.au/%7Eaquino/> > > ---------------------------------------------- > > The brain is a wonderful organ. It starts working the moment you get up > and does not stop until you get into the office. > - > Robert Frost > > CRICOS 00026A > This email plus any attachments to it are confidential. Any unauthorised > use is strictly prohibited. If you receive this email in error, please > delete it and any attachments. > > Please think of our environment and only print this e-mail if necessary. > > > On Fri, Oct 2, 2015 at 6:26 PM, Douglas Greve <gr...@nmr.mgh.harvard.edu> > wrote: > >> >> Try using Method 1 from this version of mri_surf2vol >> >> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_surf2vol >> >> >> On 10/2/15 11:38 AM, Kevin Aquino wrote: >> >> Ah sorry for not being clear, >> >> Basically I would like the output from mris_surf2vol with the mask option >> to be less speckled. >> >> For example, in the image attached: >> http://www.physics.usyd.edu.au/~aquino/example_mri_surf2vol.png >> >> there are some voxels missing. Is there an option to fill these voxels? >> >> >> Cheers, >> >> >> *Dr Kevin Aquino* >> Research fellow, >> Sir Peter Mansfield Magnetic Resonance Center, The University of >> Nottingham. >> >> Honorary Research Fellow >> School of Physics, Faculty of Science, University of Sydney >> >> *E* kevin.aqu...@nottingham.ac.uk, aqu...@physics.usyd.edu.au | *W* >> www.physics.usyd.edu.au/~aquino/ >> <http://www.physics.usyd.edu.au/%7Eaquino/> >> >> ---------------------------------------------- >> >> The brain is a wonderful organ. It starts working the moment you get up >> and does not stop until you get into the office. >> - >> Robert Frost >> >> CRICOS 00026A >> This email plus any attachments to it are confidential. Any unauthorised >> use is strictly prohibited. If you receive this email in error, please >> delete it and any attachments. >> >> Please think of our environment and only print this e-mail if necessary. >> >> >> On Fri, Oct 2, 2015 at 1:42 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> >> wrote: >> >>> Hi Kevin >>> >>> I'm not clear on what you need. Would mri_surf2vol --fillribbon do what >>> you want? I don't really know what else "voxelize" means >>> >>> cheers >>> Bruce >>> >>> >>> On Fri, 2 Oct 2015, Kevin Aquino wrote: >>> >>> Hi all, >>>> I am trying to "voxelize" the cortical surfaces generated in freesurfer >>>> and >>>> I am a little stuck. >>>> >>>> I have been using mris_surf2vol with the --mask option however this >>>> generates a very speckled representation of the cortical surface on the >>>> voxels. What I would prefer would be the level sets of the cortical >>>> surface >>>> interpolated onto voxels, even if they are at a different resolution >>>> that >>>> could be enough. Is this possible with any of the available commands? >>>> >>>> I also went down the route of mris_volmask however, this generates the >>>> cortical ribbon, which is something that I don't need. >>>> >>>> Cheers, >>>> >>>> >>>> Dr Kevin Aquino >>>> Research fellow, >>>> Sir Peter Mansfield Magnetic Imaging Center, >>>> School of Physics & astronomy, The University of Nottingham. >>>> >>>> Honorary Research Fellow >>>> School of Physics, Faculty of Science, University of Sydney. >>>> >>>> E kevin.aqu...@nottingham.ac.uk, aqu...@physics.usyd.edu.au | W >>>> www.physics.usyd.edu.au/~aquino/ >>>> <http://www.physics.usyd.edu.au/%7Eaquino/> >>>> >>>> ---------------------------------------------- >>>> >>>> The brain is a wonderful organ. It starts working the moment you get up >>>> and >>>> does not stop until you get into the office. >>>> - >>>> Robert Frost >>>> >>>> CRICOS 00026A >>>> This email plus any attachments to it are confidential. Any >>>> unauthorised use >>>> is strictly prohibited. If you receive this email in error, please >>>> delete it >>>> and any attachments. >>>> >>>> Please think of our environment and only print this e-mail if necessary. >>>> >>>> >>>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to whom >>> it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . 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If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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