You need to have "Input" as the first line to each subject, eg, Input 7541001001 genderF-groupAR 2.489 6.77
On 10/13/2015 08:11 PM, Bronwyn Overs wrote: > Dear mailing list, > > I am trying to run a longitudinal 2 stage model using mri_glmfit. Here > is the command I am using: > > mri_glmfit --fsgd long-2stage_ConAR.fsgd --glmdir > long-2stage_ConAR.area.lh.spc.glmdir --y > long-ConAR.lh.area-spc.stack.fwhm10.mgh dods --C me_age-all.mtx --C > me_gender.mtx --C me_group.mtx --C int_ageXgroup.mtx --C > int_ageXgender.mtx --C int_genderXgroup.mtx --C > int_ageXgenderXgroup.mtx --surf fsaverage lh --label > long-ConAR.lh.area.fsaverage.cortex.label > > However, when I try to run the command it has problems reading my fsgd > file. I have attached my file for reference and here are the errors it > spits out: > > gdfReadHeader: reading long-2stage_ConAR.fsgd > INFO: ignoring tag 7541001001 > INFO: ignoring tag 7541002001 > INFO: ignoring tag 7541003001 > INFO: ignoring tag 7541006001 > INFO: ignoring tag 7541009001 > INFO: ignoring tag 7541011004 > INFO: ignoring tag 7541012004 > INFO: ignoring tag 7541017001 > INFO: ignoring tag 7541018001 > INFO: ignoring tag 7541020001 > INFO: ignoring tag 7541022001 > INFO: ignoring tag 7541023001 > INFO: ignoring tag 7541024001 > INFO: ignoring tag 7541026001 > INFO: ignoring tag 7541030001 > INFO: ignoring tag 7541031001 > INFO: ignoring tag 7541036001 > INFO: ignoring tag 7541040001 > INFO: ignoring tag 7541041001 > INFO: ignoring tag 7541042001 > INFO: ignoring tag 7541044001 > INFO: ignoring tag 7541046001 > INFO: ignoring tag 7541047001 > INFO: ignoring tag 7541048004 > INFO: ignoring tag 7541049001 > INFO: ignoring tag 7541052001 > INFO: ignoring tag 7541055001 > INFO: ignoring tag 7541057001 > INFO: ignoring tag 7541058001 > INFO: ignoring tag 7541059001 > INFO: ignoring tag 7541060001 > INFO: ignoring tag 7541062001 > INFO: ignoring tag 7541070001 > INFO: ignoring tag 7541075001 > INFO: ignoring tag 7541078001 > INFO: ignoring tag 7541080001 > INFO: ignoring tag 7541084001 > INFO: ignoring tag 7541085001 > INFO: ignoring tag 7541088001 > INFO: ignoring tag 7541090001 > INFO: ignoring tag 7541093001 > INFO: ignoring tag 7541094001 > INFO: ignoring tag 7541096001 > INFO: ignoring tag 7541097004 > INFO: ignoring tag 7541099001 > INFO: ignoring tag 7541100001 > INFO: ignoring tag 7541101001 > INFO: ignoring tag 7541102001 > INFO: ignoring tag 7541103001 > INFO: ignoring tag 7541106001 > INFO: ignoring tag 7541108001 > INFO: ignoring tag 7541110004 > INFO: ignoring tag 7541112001 > INFO: ignoring tag 7541114001 > INFO: ignoring tag 7541116001 > INFO: ignoring tag 7541118001 > INFO: ignoring tag 7541119001 > INFO: ignoring tag 7541120001 > INFO: ignoring tag 7541124001 > INFO: ignoring tag 7541125001 > INFO: ignoring tag 7541132004 > INFO: ignoring tag 7541133001 > INFO: ignoring tag 7541139001 > INFO: ignoring tag 7541142001 > INFO: ignoring tag 7541143001 > INFO: ignoring tag 7541146001 > INFO: ignoring tag 7541149001 > INFO: ignoring tag 7541150001 > INFO: ignoring tag 7541151001 > INFO: ignoring tag 7541156001 > INFO: ignoring tag 7541161001 > INFO: ignoring tag 7541165001 > INFO: ignoring tag 7541168001 > INFO: ignoring tag 7541175001 > INFO: ignoring tag 7541177001 > INFO: ignoring tag 7541178001 > INFO: ignoring tag 7541182001 > INFO: ignoring tag 7541185001 > INFO: ignoring tag 7541188001 > INFO: ignoring tag 7541190004 > INFO: ignoring tag 7541192004 > INFO: ignoring tag 7541196001 > INFO: ignoring tag 7541198001 > INFO: ignoring tag 7541209001 > INFO: ignoring tag 7541223001 > INFO: ignoring tag 7541227001 > INFO: ignoring tag 7541334001 > INFO: ignoring tag 7541337001 > INFO: ignoring tag 7541345001 > INFO: ignoring tag 7541346001 > INFO: ignoring tag 7541353001 > INFO: ignoring tag 7541366001 > INFO: ignoring tag 7541378001 > INFO: ignoring tag 7541383001 > INFO: ignoring tag 7541388001 > INFO: ignoring tag 7541391001 > INFO: ignoring tag 7541396001 > INFO: ignoring tag 7541400001 > INFO: ignoring tag 7541401001 > INFO: ignoring tag 7541402001 > INFO: ignoring tag 7541409001 > INFO: ignoring tag 7541411001 > INFO: ignoring tag 7541412001 > INFO: ignoring tag 7541421001 > INFO: ignoring tag 7541442004 > INFO: ignoring tag 7541443001 > INFO: ignoring tag 7541445001 > WARNING: gdfReadV1: class genderM-groupCtl is defined but not used. > INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. > Continuous Variable Means (all subjects) > 0 years -nan -nan > 1 age_mc -nan -nan > Class Means of each Continuous Variable > 1 genderM-groupCtl -nan -nan > 2 genderF-groupCtl -nan -nan > 3 genderM-groupAR -nan -nan > 4 genderF-groupAR -nan -nan > INFO: gd2mtx_method is dods > ERROR: Option dods unknown > > Can you tell me what is wrong? > > > Kind regards, > > Bronwyn Overs > Research Assistant > > Neuroscience Research Australia > > Neuroscience Research Australia > Margarete Ainsworth Building > Barker Street Randwick Sydney NSW 2031 Australia > *M* 0411 308 769 *T* +61 2 9399 1883 > > neura.edu.au <http://neura.edu.au> > > Follow @neuraustralia on twitter > <https://twitter.com/neuraustralia>Follow NeuRA on facebook > <https://www.facebook.com/NeuroscienceResearchAustralia>Subscribe to > the NeuRA Magazine <http://www.neura.edu.au/help-research/subscribe> > > > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
