Hi Chaz, unfortunately version 5 does not support arbitrary slice orders. It will be available in version 6. doug
On 11/03/2015 06:27 PM, Gay,Charles Wysaw wrote: > Hi - > > 1) I am trying to perform preprocessing steps on functional task data > that was acquired on a Phillips scanner using an interleaved > acquisition. There are 42 slices and the order is > [0,6,12,18,24,30,36,1,7,13,19,25,31,37,2,8,14,20,26,32,38,3,9,15,21,27,33,39,4,10,16,22,28,34,40,5,11,17,23,29,35,41]. > I’ve > tried > –slice order followed by the sequence but that didn’t seem to work. > And I wasn’t able to find anything in stc-sess –help that explained > how to enter the exact sequence order. > If you could show me how to add/change the tutorial code below, that > would be great. Thanks. > 2) Do I need to modify the onsets in the paradigmfile? > > Thanks, > Chaz > > > preproc-sess -s sess01 -fsd bold -stc up -surface fsaverage lhrh -mni305 > -fwhm 5 -per-run > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
