Dear FreeSurfer experts, After running the following command:
recon-all -autorecon2 -autorecon3 -subjid S08_FS I get the following error: /Volumes/FLYNN/ProjetPhonoBehavioralTMS/Freesurfer/S08_FS/mri \n mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz \n threshold mask volume at 5 ERROR: dimension mismatch between source and mask Darwin Isabelles-iMac.local 12.6.0 Darwin Kernel Version 12.6.0: Wed Mar 18 16:23:48 PDT 2015; root:xnu-2050.48.19~1/RELEASE_X86_64 x86_64 recon-all -s S08_FS exited with ERRORS at Mon Nov 9 18:56:20 EST 2015 I read in a post that it might be a problem with registration, so following a post found on the forum, I re-analyze this participant (from scratch) using: recon-all --autorecon1 -use-mritotal -subjid S08_FS then I ran recon-all -autorecon2 -autorecon3 -subjid S08_FS However, this did not solve the problem. Is there a workaround that I could use after the pial edits and running the -autorecon2 and 3? Thank you very much in advance, Isabelle _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
