HI Guido
skipping the aseg will mean you need to do a lot more manual intervention
to get good surfaces (e.g. filling ventricles, "spackling" wm inferior to
hippocampus, etc...), so I wouldn't recommend it
sorry
Bruce
On Mon, 23 Nov 2015, Guido
Orlando Pascariello wrote:
Hi FS Experts
I'm using FreeSurfer to process my T1 data in order to get white and pial
surfaces from it.
I have a questions about usages of this file 'aseg.mgz'.
In the 'recon-all' pipeline, there are some steps in which I can use it or
don't use it depend on if I want or don't. I wonder What are the
differences in the result in each option?
My goal is skip the '-careg' step to save time because I'm not interested in
volumetry.
I'll be grateful if you can help
Being all for now, I await a reply
Guido PASCARIELLO
Facultad de Ingeniería - Universidad Nacional de Entre Ríos
Argentina
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