Hi Ajay
are you sure you didn't run out of disk space? That error is a sanity
check on the surfaces that should never occur
cheers
Bruce
On Sun, 29 Nov 2015, Ajay
Kurani wrote:
Hello Freesurfer experts,
I am trying to run Freesurfer 6.0 beta (downloaded 10/15/15 version)
with the -hires flag to process an MNI template image which is 0.5mm
isotropic. Stage 1 ran well and on stage 2 there is an error during
pocessing:
Command run:
recon-all -s ICBM -autorecon2 -openmp 8 -3T -hires -expert expert.opts
I supplied a skull stripped brain which was nu corrected and so I used the
T1.mgz and copied it to brainmask.mgz and nu.mgz in autorecon1 stage. I
then ran autorecon2 and it was working well until I was at the -fix stage
and ran into the following error:
Error:
mris_euler_number ./surf/lh.orig
mrisFindNeighbors: ./surf/lh.orig: face[46196].v[0] = 24215, but face 46196
not in vertex 24215 face list
I am not sure if this is due to the fact that we have a very high
resolution image (template) and if there are any modifications needed aside
from the hires flag. Are there any suggestions you have?
Thanks,
Ajay
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