I have run mri_fdr --help but I obtained this warning: /Applications/freesurfer/bin/mri_fdr: Permission denied.
I would also ask you if is possible to threshold the FDR map (p<0.05), eliminating clusters < 5 voxels. Thanks Stefano >----Messaggio originale---- >Da: gr...@nmr.mgh.harvard.edu >Data: 11-dic-2015 20.23 >A: <freesurfer@nmr.mgh.harvard.edu> >Ogg: Re: [Freesurfer] R: Re: FDR in FS-FAST > >$FREESURFER_HOME/bin > >On 12/11/15 2:08 PM, std...@virgilio.it wrote: >> Thanks, in which folder I should put this file? >> >> Stefano >> >> >>> ----Messaggio originale---- >>> Da: gr...@nmr.mgh.harvard.edu >>> Data: 7-dic-2015 19.23 >>> A: <freesurfer@nmr.mgh.harvard.edu> >>> Ogg: Re: [Freesurfer] FDR in FS-FAST >>> >>> >>> >>> On 12/07/2015 08:35 AM, std...@virgilio.it wrote: >>>> Hi list, >>>> I have two concerns, please: >>>> 1) It is possible to apply FDR correction on rs-fMRI seed based >>>> analysis by FS-FAST? If yes, I can I do it? >>> try this binary >>> ftp://surfer.nmr.mgh.harvard. edu/transfer/outgoing/flat/greve/mri_fdr >>>> 2) I have apply the FS guidelines and I have used Montecarlo >>>> correction with threshold at 1.3 but in the within group analysis >> the >>>> clusters are very large. In the guide I read examples with a >> threshold >>>> at 3. Is there a specific reason? >>> There is not a hard-and-fast criteria for the voxel-wise threshold. 3 >> is >>> fine as is 1.3 >>>> Thanks >>>> >>>> Stefano >>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> Outgoing: ftp://surfer.nmr.mgh.harvard. >> edu/transfer/outgoing/flat/greve/ >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to >> whom it is >>> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >>> contains patient information, please contact the Partners Compliance >> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >>> but does not contain patient information, please contact the sender >> and properly >>> dispose of the e-mail. >>> >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > >_______________________________________________ >Freesurfer mailing list >Freesurfer@nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
