Thanks a lot Martin. I was running it on cluster and my quota was exceeded. You saved my day.
Regards, Nabin On Thu, Dec 17, 2015 at 3:04 PM, Martin Reuter <mreu...@nmr.mgh.harvard.edu> wrote: > Hi Nabin, > > maybe you run out of disk space at different places? > > It should print the command that it was trying to run before it prints the > error, try running that command manually from the command line to get more > info on what happens. > > Best, Martin > > > > On 12/17/2015 08:52 AM, Nabin Koirala wrote: > > > Hi all, > > I am doing longitudinal analysis (recon-all) and while running the > long_mri_slopes using the following command, I am getting different errors > for each run and its driving me crazy. > > The command I am running : > > long_mris_slopes --qdec ./qdec/long.qdec.Sub_7_t0t1.dat --meas thickness > --hemi lh --do-avg --do-pc1 --do-spc --do-stack --do-label --time years > --qcache fsaverage --sd /home/nk/freesurfer/subjects/ > > I could not make any sense as the errors as they are different every time > and sometimes it gets completed aswel. The various errors are : > > ERROR 1 : mri_convert splitting qcache stack did not work? > > ERROR 1 : mris_label_calc intersect did not work? > > ERROR 1 : mri_glmfit did not work? > > These are for the same subject and for the same hemisphere. And once it > completed for left hemisphere but threw similar error for right hemisphere. > > Your suggestions would be very much appreciated. > > PS This is not only for one subject but for most of them. > > Thank you. > > Regards, > Nabin > > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- > Martin Reuter, PhD > Assistant Professor of Radiology, Harvard Medical School > Assistant Professor of Neurology, Harvard Medical School > A.A.Martinos Center for Biomedical Imaging > Massachusetts General Hospital > Research Affiliate, CSAIL, MIT > Phone: +1-617-724-5652 > Web : http://reuter.mit.edu > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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