QDEC cannot but the information may be in the output folder. There should be a file called gammavar.mgh. This will be the standard variance (so take the square root)
On 12/21/2015 02:08 PM, John Anderson wrote: > Thanks you very much Doug, > Please one more question. Is there any way in Qdec to get the stamdard > error (SE) ? > Bests, > John > *Sent:* Monday, December 21, 2015 at 11:43 AM > *From:* "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> > *To:* freesurfer@nmr.mgh.harvard.edu > *Subject:* Re: [Freesurfer] Qdec visualization > The correction for multiple comparisons is cluster-based. Each cluster > gets a single number. In the display, all the vertices get that same > number. > > On 12/18/2015 03:17 PM, John Anderson wrote: > > Hi Freesurfer experts, > > I am using Qdec in Freesurfer 5.3 to do some cortical thickness > > comparisons between two groups. > > > > Before corrcting the results for multiple comparisons ( monte carlo > > simulation) the significant differnce between the groups is visualized > > as a range of color while after correcting for multiple copmparisons > > the color of the statistical map is usinform ( Attached) > > Is ther any way to visualze the results as a range of color after > > correcting the results for multiple comparsiosn > > > > Thanks in advance for any advice > > Bests, > > John Anderson > > > > Senior Research Associate > > Psychological and Brain Sciences Dept. > > Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 > > Phone: +1 (603) 646-9834 > > Fax: +1 (603) 646-1419 > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom > it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you > in error > but does not contain patient information, please contact the sender > and properly > dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
