Not sure. Zeke? On 12/21/2015 02:13 PM, std...@virgilio.it wrote: > yes and this is the error: > mri_fdr > dyld: Library not loaded: @executable_path/../lib/gcc/lib/libstdc++.6. > dylib > Referenced from: /Applications/freesurfer/bin/mri_fdr > Reason: image not found > Trace/BPT trap > > >> ----Messaggio originale---- >> Da: gr...@nmr.mgh.harvard.edu >> Data: 21-dic-2015 20.04 >> A: <freesurfer@nmr.mgh.harvard.edu> >> Ogg: Re: [Freesurfer] R: Re: R: R: Re: R: Re: FDR in FS-FAST >> >> have you tried changing the permission to be exectuable? >> chmod a+x mri_fdr >> >> On 12/21/2015 02:02 PM, std...@virgilio.it wrote: >>> Thanks but permission denied persist. >>> >>> >>>> ----Messaggio originale---- >>>> Da: gr...@nmr.mgh.harvard.edu >>>> Data: 21-dic-2015 17.33 >>>> A: <freesurfer@nmr.mgh.harvard.edu> >>>> Ogg: Re: [Freesurfer] R: R: Re: R: Re: FDR in FS-FAST >>>> >>>> >>>> Try this version for mac >>>> ftp://surfer.nmr.mgh.harvard. > edu/transfer/outgoing/flat/greve/mri_fdr. >>> osx >>>> Use mri_surfcluster (or mri_volcluster) to do the clustering >>>> >>>> >>>> On 12/18/2015 05:11 PM, std...@virgilio.it wrote: >>>>> I have run >>>>> mri_fdr --help >>>>> but I obtained this warning: >>>>> /Applications/freesurfer/bin/mri_fdr: Permission denied. >>>>> >>>>> I would also ask you if is possible to threshold the FDR map > (p<0. >>>>> 05), >>>>> eliminating clusters < 5 voxels. >>>>> >>>>> Thanks >>>>> >>>>> >>>>> Stefano >>>>> >>>>> >>>>> >>>>>>> ----Messaggio originale---- >>>>>>> Da: gr...@nmr.mgh.harvard.edu >>>>>>> Data: 11-dic-2015 20.23 >>>>>>> A: <freesurfer@nmr.mgh.harvard.edu> >>>>>>> Ogg: Re: [Freesurfer] R: Re: FDR in FS-FAST >>>>>>> >>>>>>> $FREESURFER_HOME/bin >>>>>>> >>>>>>> On 12/11/15 2:08 PM, std...@virgilio.it wrote: >>>>>>>> Thanks, in which folder I should put this file? >>>>>>>> >>>>>>>> Stefano >>>>>>>> >>>>>>>> >>>>>>>>> ----Messaggio originale---- >>>>>>>>> Da: gr...@nmr.mgh.harvard.edu >>>>>>>>> Data: 7-dic-2015 19.23 >>>>>>>>> A: <freesurfer@nmr.mgh.harvard.edu> >>>>>>>>> Ogg: Re: [Freesurfer] FDR in FS-FAST >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> On 12/07/2015 08:35 AM, std...@virgilio.it wrote: >>>>>>>>>> Hi list, >>>>>>>>>> I have two concerns, please: >>>>>>>>>> 1) It is possible to apply FDR correction on rs-fMRI seed >>> based >>>>>>>>>> analysis by FS-FAST? If yes, I can I do it? >>>>>>>>> try this binary >>>>>>>>> ftp://surfer.nmr.mgh.harvard. >>>>>> edu/transfer/outgoing/flat/greve/mri_fdr >>>>>>>>>> 2) I have apply the FS guidelines and I have used Montecarlo >>>>>>>>>> correction with threshold at 1.3 but in the within group >>>>> analysis >>>>>>>> the >>>>>>>>>> clusters are very large. In the guide I read examples with a >>>>>>>> threshold >>>>>>>>>> at 3. Is there a specific reason? >>>>>>>>> There is not a hard-and-fast criteria for the voxel-wise >>>>>> threshold. 3 >>>>>>>> is >>>>>>>>> fine as is 1.3 >>>>>>>>>> Thanks >>>>>>>>>> >>>>>>>>>> Stefano >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> _______________________________________________ >>>>>>>>>> Freesurfer mailing list >>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>>> -- >>>>>>>>> Douglas N. Greve, Ph.D. >>>>>>>>> MGH-NMR Center >>>>>>>>> gr...@nmr.mgh.harvard.edu >>>>>>>>> Phone Number: 617-724-2358 >>>>>>>>> Fax: 617-726-7422 >>>>>>>>> >>>>>>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>>>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>>>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>>>> Outgoing: ftp://surfer.nmr.mgh.harvard. >>>>>>>> edu/transfer/outgoing/flat/greve/ >>>>>>>>> _______________________________________________ >>>>>>>>> Freesurfer mailing list >>>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>>> >>>>>>>>> >>>>>>>>> The information in this e-mail is intended only for the > person >>> to >>>>>>>> whom it is >>>>>>>>> addressed. If you believe this e-mail was sent to you in > error >>>>> and >>>>>>>> the e-mail >>>>>>>>> contains patient information, please contact the Partners >>>>>> Compliance >>>>>>>> HelpLine at >>>>>>>>> http://www.partners.org/complianceline . If the e-mail was > sent >>>>> to >>>>>>>> you in error >>>>>>>>> but does not contain patient information, please contact the >>>>>> sender >>>>>>>> and properly >>>>>>>>> dispose of the e-mail. >>>>>>>>> >>>>>>>>> >>>>>>>> _______________________________________________ >>>>>>>> Freesurfer mailing list >>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>> >>>>>>>> >>>>>>> _______________________________________________ >>>>>>> Freesurfer mailing list >>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>> >>>>>> _______________________________________________ >>>>>> Freesurfer mailing list >>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> >>>>> >>>> -- >>>> Douglas N. Greve, Ph.D. >>>> MGH-NMR Center >>>> gr...@nmr.mgh.harvard.edu >>>> Phone Number: 617-724-2358 >>>> Fax: 617-726-7422 >>>> >>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>> Outgoing: ftp://surfer.nmr.mgh.harvard. >>> edu/transfer/outgoing/flat/greve/ >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard. > edu/transfer/outgoing/flat/greve/ >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
