what server did you upload it to? What is the name of the file? Make sure to include the entire output folder, not just the input files
On 12/21/2015 03:33 PM, Fengji Geng wrote: > Hi Bruce, > > I have uploaded all the data to the server. The command that I run is > 'recon-all -all -s $s -hippocampal-subfields-T1T2 $s/T2/*.mgz T1T2'. > > It would be great if you could keep us updated on how the fixing is > going. > > Thanks! > > --------------------------------------------------------------------------------------------------------------------------------------- > Message: 1 > Date: Mon, 21 Dec 2015 10:38:08 -0500 (EST) > From: Bruce Fischl <fis...@nmr.mgh.harvard.edu> > Subject: Re: [Freesurfer] FW: segmentation fault (core dumped) > To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Message-ID: > <alpine.lrh.2.20.1512211037340.22...@gate.nmr.mgh.harvard.edu> > Content-Type: text/plain; charset="iso-8859-1" > > Hi Fengji > > hmmm, I don't remember ever seeing a core dump in mri-segstats before. If > you upload the entire subject dir (tarred and gzipped) to our ftp site we > will fix it. > > cheers > Bruce > > > > ----- > Fengji > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
