Hi Luis
sorry, the BA stuff is almost at the very end so you will need to run
pretty much everything. We are down to 8 hours or so on modern multi-core
CPUs (and even faster than that with 4-8 threads)
cheers
Bruce
On Tue, 22 Dec 2015, Luis
Fernado Silva Castro de Araújo wrote:
Do I have to run recon-all entirely in order to extract volume for a few
Brodmann's areas? Or is there a way of optimizing the process by striping it
of any unneeded calculations?
It is taking 21h to analyze one subject.
Best,
luis
2015-12-22 9:44 GMT+11:00 Douglas N Greve <gr...@nmr.mgh.harvard.edu>:
If you're doing anatomical analysis, then FSFAST is not needed
(nor its
directly structure). If you have an input anatomical volume in
any
format, then just run
recon-all -s yoursubjectname -all -i inputfile
inputfile can include img but be warned that img does not have
information about head orientation. This may cause a
catastrophic
failure (eg, the head is upside down). If the head is left-right
reversed, then it probably won't fail but everything will be
left-right
reversed. don't say I did not warn you:)
On 12/21/2015 05:37 PM, Luis Fernado Silva Castro de Araújo
wrote:
>
> Dear Douglas,
>
> It's an anatomical analysis. Perhaps I misunderstood the
requirement
> for setting up the directories in the FSFAST for the recon-all
command.
>
> If that is the case, it is then a matter of converting my img
files
> into mgz and run recon-all on them, am I right?
>
> Does the command recon-all also gives me volumes for specific
> Brodmann's areas? Or do I have to run a labeling to that?
>
>
> Thank you,
>
> luis
>
>
>
>
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