Dear colleagues, We are recently using the freesurfer recon-all command
recon-all -s XXXX -I XXXX.nii.gz recon-all -s XXXX -all where XXXX stands for the subject ID. I have been trying to execute this command with the different input files: 1) original dicom-files 2) nii-file where the field of view was cut, apart from that the same file as in 3) 3) nii.gz-file, was computed by mri_convert with the files from 1) We guessed results should be the same, but unfortunately, the segmentation looks slightly different in all three cases. Maybe you can help us by trying to find out why the output files are different? Thanks very much in advance! Best regards, Susanne ______________________________________ Susanne Schell, Dipl.-Psych. Sektion Störungen der Persönlichkeitsentwicklung Klinik für Kinder- und Jugendpsychiatrie Universitätsklinikum Heidelberg Tel: (+49) - (0)6221-56 35135 e-mail: susanne.sch...@med.uni-heidelberg.de<mailto:susanne.sch...@med.uni-heidelberg.de>
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
