Hi Mohamed you can use mri_synthesize to create a flash image with good T1 contrast from quantitative maps and run it through recon-all.
cheers Bruce On Mon, 11 Jan 2016, Mohamed Ali Bahri wrote: > Dear Freesurfer Experts, > > I am wondering if the cortical reconstruction is possible for the > quantitative mri images (R1, MT, PD...) obtained with the multiparameter > sequences . > If yes which image should i use? > > Many thanks in advance, > > Mohamed > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
