what version are you running? I believe that this is a bug that has been fixed. Hopefully we will get version 6 out soon and upgrading will fix this, but you can download a beta and try to make sure if you want
cheers Bruce On Tue, 12 Jan 2016, Smaragdi A. wrote: > Hi mailing list, > > I have encountered this problem in Freesurfer a number of times now and I > wondered if any of you had any solutions. > > It seems that sometimes after a recon-all has been run, there is a large > overlap of the pial boundary and wm boundary, in the same region each time > near the lateral ventricles (it can be on either hemisphere or both). I have > attached a print screen of the issue, this time in the LH. As you can see, we > have tried adding CPs and have also added WM, but after re-running it, the > problem still exists. We have also tried running the randomness, but this has > had no effect. > > Any suggestions as to what we could do to fix this would be great - thank you! > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
