Yes they were.
> On Jan 21, 2016, at 06:14, Eugenio Iglesias <[email protected]> wrote: > > Hi Jiook, > the log file says that the analysis of the left side did complete. Were the > output files written? > Cheers, > Eugenio > > Juan Eugenio Iglesias > Postdoctoral researcher BCBL > www.jeiglesias.com > www.bcbl.eu > > Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer > > From: "Jiook Cha" <[email protected]> > To: "iglesias" <[email protected]> > Cc: "Freesurfer support list" <[email protected]> > Sent: Wednesday, January 20, 2016 2:16:36 AM > Subject: HippocampalSubfields only generates lh > > Hi Iglesias, > > I recently tried HippocampalSubfields in freesurfer 6.0. It only completed > hippocampal segmentation for the left hemisphere, but not the right. > > Under scripts folder, recon-all.error says: > /ifs/scratch/pimri/posnerlab/freesurfer_dev/freesurfer/bin/recon-all > PWD /ifs/scratch/pimri/posnerlab/1anal/osa/fs2/B03/label > CMD > /ifs/scratch/pimri/posnerlab/freesurfer_dev/freesurfer/bin/segmentSF_T1.sh > /ifs/scratch/pimri/posnerlab/freesurfer_dev/freesurfer/MCRv80 > /ifs/scratch/pimri/posnerlab/freesurfer_dev/freesurfer B03 > /ifs/scratch/pimri/posnerlab/1anal/osa/fs2 left > > So it seems as left hippocampus failed the pipeline didn’t try the right > hippocampus. > > Attached is hippocampal-subfields-T1.log. Do you have any idea what’s > happening here? > > > > > > > > > > > > > Best, > > Jiook > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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