I agree that the inflated is fine. It doesn't live in any particularly interesting volumetric coordinate system, so displaying it that way doesn't really make sense.
As for the hippocampus, it looks fine on the slices you sent. If you upload the dataset I'll take a look cheers Bruce On Wed, 10 Feb 2016, dgw wrote: > Hi Jasmin, > > nothing looks wrong with the inflated brain images to me. Remember, > the inflated brain doesn't have the same space as the T1 or white > matter surface, so they are just centered. And overlap one another as > the slice views showed. I'm afraid I can't help with the hippocampal > question, though you may want to try adding some details. > > hth > d > > On Wed, Feb 10, 2016 at 5:30 PM, Jasmin Alves <jal...@usc.edu> wrote: >> Hello freesurfer, >> >> I received this odd inflated surface image. I am not sure if this is >> something that can be fixed via a registration step or should be fixed in >> another step. Your input as to how to correct this image would be greatly >> appreciated. Also, I noticed that this participant's hippocampal volume is >> half the amount compared to the rest of my participants. Is it possible >> these two problems are related or am I possibly dealing with two separate >> issues? I have attached a screen shot of both problems. >> >> Thank you very much, >> Jasmin >> >> -- >> Jasmin Alves >> Predoctoral Student >> Medical Biology Graduate Program >> University of Southern California >> jal...@usc.edu >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
